CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SNRPB2
(
Procavia capensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPCAG00000003156
T40303_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.806
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.784
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.784
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.784
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.784
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.784
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.784
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.784
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.784
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPCAP00000002945
RRM
9
80
IYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMX
ENSPCAP00000002945
RRM
153
219
LFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMK
Links
Other
RRM
family RBPs
Other
Procavia capensis
RBPs
115 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRUNOL5
Homo sapiens
ENSG00000161082
D
0.000
CELF5
Bos taurus
ENSBTAG00000021774
I
0.000
CELF5
Oryzias latipes
ENSORLG00000004600
I
0.000
CELF4
Oryzias latipes
ENSORLG00000008913
I
0.000
CELF5
Procavia capensis
ENSPCAG00000002170
I
0.000
CELF5
Pteropus vampyrus
ENSPVAG00000014619
I
0.000
CELF5
Sus scrofa
ENSSSCG00000013476
I
0.000
BRUNOL5
Taeniopygia guttata
ENSTGUG00000000514
I
0.000
CELF3
Tetraodon nigroviridis
ENSTNIG00000008062
I
0.000
CELF3
Takifugu rubripes
ENSTRUG00000012064
I
0.000
CELF4
Takifugu rubripes
ENSTRUG00000015481
I
0.000
CELF5
Tursiops truncatus
ENSTTRG00000009625
I
0.000
celf4
Xenopus tropicalis
ENSXETG00000020486
I
0.000
Ame_R011948
Ailuropoda melanoleuca
Ame_R011948
I
0.000
AAH46942
Xenopus laevis
AAH46942
I
0.000
CELF5
Otolemur garnettii
ENSOGAG00000014161
I
0.000
CELF4
Oryctolagus cuniculus
ENSOCUG00000024790
I
0.000
CELF5
Canis familiaris
ENSCAFG00000019263
I
0.000
CELF6
Cavia porcellus
ENSCPOG00000025842
I
0.000
celf5
Danio rerio
ENSDARG00000071375
I
0.000
Celf5
Dipodomys ordii
ENSDORG00000005915
I
0.000
CELF5
Echinops telfairi
ENSETEG00000016221
I
0.000
CELF3
Homo sapiens
ENSG00000159409
I
0.000
CELF3
Gasterosteus aculeatus
ENSGACG00000011707
I
0.000
CELF4
Loxodonta africana
ENSLAFG00000021352
I
0.000
CELF5
Meleagris gallopavo
ENSMGAG00000001169
I
0.000
CELF3
Macaca mulatta
ENSMMUG00000016952
I
0.000
CELF6
Monodelphis domestica
ENSMODG00000001784
I
0.000
Celf4
Mus musculus
ENSMUSG00000024268
I
0.000
Q7ZWM3
Xenopus laevis
Q7ZWM3
I
0.000
CELF3
Microcebus murinus
ENSMICG00000010644
N
0.000