ENSSTOG00000007139 (Spermophilus tridecemlineatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSTOG00000007139 T41602_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000006381 RRM 50 108

Links

Other RRM family RBPs
Other Spermophilus tridecemlineatus RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
s_468317 Phytophthora sojae s_468317 N 0.000
estExt_Genewise1Plus.C_chr_70397 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_70397 N 0.000
estExt_Genewise1Plus.C_600117 Volvox carteri estExt_Genewise1Plus.C_600117 N 0.000
estExt_Genewise1Plus.C_250095 Phycomyces blakesleeanus estExt_Genewise1Plus.C_250095 N 0.000
estExt_Genewise1Plus.C_10659 Myceliophthora thermophila estExt_Genewise1Plus.C_10659 N 0.000
estExt_Genewise1Plus.C_10658 Mucor circinelloides estExt_Genewise1Plus.C_10658 N 0.000
estExt_genewise1_human.C_chr_1.20929 Pichia stipitis estExt_genewise1_human.C_chr_1.20929 N 0.000
estExt_Genewise1.C_5820041 Capitella teleta estExt_Genewise1.C_5820041 N 0.000
estExt_Genewise1.C_260084 Melampsora laricis populina estExt_Genewise1.C_260084 N 0.000
estExt_Genewise1.C_10689 Thielavia terrestris estExt_Genewise1.C_10689 N 0.000
estExt_fgeneshHS_pm.C_280002 Naegleria gruberi estExt_fgeneshHS_pm.C_280002 N 0.000
estExt_fgenesh2_pm.C_sca_70005 Lottia gigantea estExt_fgenesh2_pm.C_sca_70005 N 0.000
fgenesh1_kg.C_scaffold_5000048 Selaginella moellendorfii fgenesh1_kg.C_scaffold_5000048 N 0.000
fgenesh1_pg.C_scaffold_107000027 Daphnia pulex fgenesh1_pg.C_scaffold_107000027 N 0.000
fgenesh1_pg.scaffold_18000119 Nematostella vectensis fgenesh1_pg.scaffold_18000119 N 0.000
mgf019585m Mimulus guttatus mgf019585m N 0.000
mgf006621m Mimulus guttatus mgf006621m N 0.000
GP3.070330 Batrachochytrium dendrobatidis GP3.070330 N 0.000
Glyma18g08100.1 Glycine max Glyma18g08100.1 N 0.000
Glyma18g08080.1 Glycine max Glyma18g08080.1 N 0.000
Glyma08g44800.1 Glycine max Glyma08g44800.1 N 0.000
GID1.0042265 Dictyostelium purpureum GID1.0042265 N 0.000
fgeneshTA2_pg.C_scaffold_14000176 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_14000176 N 0.000
fgenesh3_pm.54__15 Postia placenta fgenesh3_pm.54__15 N 0.000
fgenesh2_pm.scaffold_78000001 Branchiostoma floridae fgenesh2_pm.scaffold_78000001 N 0.000
fgenesh1_pm.C_scaffold_5000030 Phytophthora ramorum fgenesh1_pm.C_scaffold_5000030 N 0.000
estExt_fgenesh1_pg.C_110137 Monosiga brevicollis estExt_fgenesh1_pg.C_110137 N 0.000
estExt_fgenesh1_kg.C_140013 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_140013 N 0.000
e_gww2.1.865.1 Phanerochaete chrysosporium e_gww2.1.865.1 N 0.000
28525.m000262 Ricinus communis 28525.m000262 N 0.000
SNAPOd2T00029081001 Oikopleura dioica SNAPOd2T00029081001 N 0.000
SNAPOd2T00014997001 Oikopleura dioica SNAPOd2T00014997001 N 0.000
EHI_065870 Entamoeba histolytica EHI_065870 N 0.000
EDI_198550 Entamoeba dispar EDI_198550 N 0.000
PNO1 Saccharomyces cerevisiae YOR145C N 0.000
Y53C12B.2 Caenorhabditis elegans Y53C12B.2 N 0.000
THAPSDRAFT_35041 Thalassiosira pseudonana Thaps35041 N 0.000
rbp28 Schizosaccharomyces pombe SPAC2C4.11c N 0.000
XM_002882767.1 Arabidopsis lyrata scaffold_301521.1 N 0.000
SB03G036840 Sorghum bicolor Sb03g036840 N 0.000
cassava30594.valid.m1 Manihot esculenta cassava30594.valid.m1 N 0.000
cassava7030.valid.m1 Manihot esculenta cassava7030.valid.m1 N 0.000
Chlre2_kg.scaffold_20000177 Chlamydomonas reinhardtii Chlre2_kg.scaffold_20000177 N 0.000
e_gwh1.2.512.1 Laccaria bicolor e_gwh1.2.512.1 N 0.000
e_gwEuk.7.409.1 Ostreococcus lucimarinus e_gwEuk.7.409.1 N 0.000
e_gw1.8.261.1 Sporobolomyces roseus e_gw1.8.261.1 N 0.000
e_gw1.7.528.1 Ostreococcus RCC809 e_gw1.7.528.1 N 0.000
e_gw1.4.614.1 Micromonas pusilla e_gw1.4.614.1 N 0.000
e_gw1.226.39.1 Physcomitrella patens e_gw1.226.39.1 N 0.000
e_gw1.2.2126.1 Schizophyllum commune e_gw1.2.2126.1 N 0.000
e_gw1.18.222.1 Chlorella NC64A e_gw1.18.222.1 N 0.000
e_gw1.13.100.1 Volvox carteri e_gw1.13.100.1 N 0.000
Cucsa.201760 Cucumis sativus Cucsa.201760 N 0.000
Cucsa.041830 Cucumis sativus Cucsa.041830 N 0.000
PPA25260 Pristionchus pacificus PPA25260 N 0.000
GRMZM2G085005 Zea mays GRMZM2G085005 N 0.000
Q8AVH4 Xenopus laevis Q8AVH4 N 0.000
PDK_20s1552091g001 Phoenix dactylifera PDK_20s1552091g001 N 0.000
Pc14g01220 Penicillium chrysogenum Pc14g01220 N 0.000
Minc09852 Meloidogyne incognita Minc09852 N 0.000
Minc08810 Meloidogyne incognita Minc08810 N 0.000
MDP0000754021 Malus x domestica MDP0000754021 N 0.000
MDP0000265633 Malus x domestica MDP0000265633 N 0.000
MDP0000136407 Malus x domestica MDP0000136407 N 0.000
MDP0000120063 Malus x domestica MDP0000120063 N 0.000
LjSGA_017760.2 Lotus japonicus LjSGA_017760.2 N 0.000
Kwal_18864 Kluyveromyces waltii Kwal_18864 N 0.000
KLTH0G02574g Kluyveromyces thermotolerans KLTH0G02574g N 0.000
PDK_20s1554761g001 Phoenix dactylifera PDK_20s1554761g001 N 0.000
PNO1 Ashbya gossypii PNO1 N 0.000
ppa009897m Prunus persica ppa009897m N 0.000
AAQ24169 Xenopus laevis AAQ24169 N 0.000
AAH42279 Xenopus laevis AAH42279 N 0.000
ZYRO0D11440g Zygosaccharomyces rouxii ZYRO0D11440g N 0.000
YALI0E01122g Yarrowia lipolytica YALI0E01122g N 0.000
XP_798188.2 Strongylocentrotus purpuratus XP_798188.2 N 0.000
XP_791733.2 Strongylocentrotus purpuratus XP_791733.2 N 0.000
XP_002162789.1 Hydra magnipapillata XP_002162789.1 N 0.000
XP_001202160.1 Strongylocentrotus purpuratus XP_001202160.1 N 0.000
XP_001202155.1 Strongylocentrotus purpuratus XP_001202155.1 N 0.000
SAKL0G03740g Lachancea kluyveri SAKL0G03740g N 0.000
ppa011086m Prunus persica ppa011086m N 0.000
KLLA0C06446g Kluyveromyces lactis KLLA0C06446g N 0.000
gw1.1.2472.1 Pleurotus ostreatus gw1.1.2472.1 N 0.000
GSTUMT00003923001 Tuber melanosporum GSTUMT00003923001 N 0.000
3712.m00082 Tetrahymena thermophila 3712.m00082 N 0.000
23888_YOR145C Saccharomyces bayanus 23888_YOR145C N 0.000
20872_YOR145C Saccharomyces paradoxus 20872_YOR145C N 0.000
20359_YOR145C Saccharomyces mikatae 20359_YOR145C N 0.000
0700010277 Ostreococcus tauri 0700010277 N 0.000
BGIBMGA014064 Bombyx mori BGIBMGA014064 N 0.000
Skud_Contig1833.8 Saccharomyces kudriavzevii Skud_Contig1833.8 N 0.000
Scas_Contig632.19 Saccharomyces castellii Scas_Contig632.19 N 0.000
Medtr3g080390 Medicago truncatula Medtr3g080390 N 0.000
EFA79428.1 Polysphondylium pallidum EFA79428.1 N 0.000
EAT88982.1 Phaeosphaeria nodorum EAT88982.1 N 0.000
A7THL8_VANPO Vanderwaltozyma polyspora A7THL8_VANPO N 0.000
Ame_R013855 Ailuropoda melanoleuca Ame_R013855 N 0.000
CAGL0K09460g Candida glabrata CAGL0K09460g N 0.000
GSPATP00021981001 Paramecium tetraurelia GSPATP00021981001 N 0.000
GSPATP00020703001 Paramecium tetraurelia GSPATP00020703001 N 0.000
Genemark1.5719_g Coccomyxa C 169 Genemark1.5719_g N 0.000
fgeneshCV_pg.C_scaffold_11000142 Chlorella vulgaris fgeneshCV_pg.C_scaffold_11000142 N 0.000
estExt_fgenesh2_kg.C_20130 Agaricus bisporus estExt_fgenesh2_kg.C_20130 N 0.000
estExt_fgenesh1_pg.C_190237 Phytophthora capsici estExt_fgenesh1_pg.C_190237 N 0.000
e_gw1.2.756.1 Heterobasidion annosum e_gw1.2.756.1 N 0.000
e_gw1.15.315.1 Tremella mesenterica e_gw1.15.315.1 N 0.000
e_gw1.12.287.1 Serpula lacrymans e_gw1.12.287.1 N 0.000
EDP42908.1 Malassezia globosa EDP42908.1 N 0.000
Cd36_35296 Candida dubliniensis Cd36_35296 N 0.000
GRMZM2G139198 Zea mays GRMZM2G139198 N 0.000
B9N5M8_POPTR Populus trichocarpa POPTR_0011s16880 N 0.000
PNO1 Canis familiaris ENSCAFG00000003256 N 0.000
DGIL_AUG5s4501g8t1 Acyrtosiphon pisum DGIL_AUG5s4501g8t1 N 0.000
amel4_ncbi_hmm14037 Apis mellifera amel4_ncbi_hmm14037 N 0.000
PK08146.1 Cannabis sativa PK08146.1 N 0.000
WUBG_12774 Wuchereria bancrofti WUBG_12774 N 0.000
TRV_03730 Trichophyton verrucosum TRV_03730 N 0.000
TESG_04215 Trichophyton tonsurans TESG_04215 N 0.000
TERG_01665 Trichophyton rubrum TERG_01665 N 0.000
TEQG_07954 Trichophyton equinum TEQG_07954 N 0.000
SS1G_04290 Sclerotinia sclerotiorum SS1G_04290 N 0.000
SPRG_02415 Saprolegnia parasitica SPRG_02415 N 0.000
SPPG_04498 Spizellomyces punctatus SPPG_04498 N 0.000
nasonia_NCBI_hmm120183 Nasonia vitripennis nasonia_NCBI_hmm120183 N 0.000
AT3G13230 Arabidopsis thaliana AT3G13230-TAIR-G N 0.000
BGIOSIBCE009391 Oryza indica BGIOSIBCE009391 N 0.000
PNO1_BOVIN Bos taurus ENSBTAG00000010604 N 0.000
PNO1 Anolis carolinensis ENSACAG00000001218 N 0.000
pno1 Dictyostelium discoideum DDB_G0287557 N 0.000
CRE05188 Caenorhabditis remanei CRE05188 N 0.000
CPIJ019677 Culex quinquefasciatus CPIJ019677 N 0.000
CPIJ015853 Culex quinquefasciatus CPIJ015853 N 0.000
CJA15618 Caenorhabditis japonica CJA15618 N 0.000
CBN06104 Caenorhabditis brenneri CBN06104 N 0.000
CBG01042 Caenorhabditis briggsae CBG01042 N 0.000
ATEG_07413 Aspergillus terreus CADATEAG00001505 N 0.000
BRADI2G52180 Brachypodium distachyon BRADI2G52180 N 0.000
SPOG_00402 Schizosaccharomyces cryophilus SPOG_00402 N 0.000
SNOG_03777 Stagonospora nodorum SNOG_03777 N 0.000
RO3G_05288 Rhizopus oryzae RO3G_05288 N 0.000
CpipJ_CPIJ019677 Culex pipiens CpipJ_CPIJ019677 N 0.000
CpipJ_CPIJ015853 Culex pipiens CpipJ_CPIJ015853 N 0.000
CPAG_01545 Candida parapsilosis CPAG_01545 N 0.000
CNBG_1323 Cryptococcus neoformans CNBG_1323 N 0.000
CLUG_01545 Candida lusitaniae CLUG_01545 N 0.000
CIMG_07268 Coccidioides immitis CIMG_07268 N 0.000
Bm1_42995 Brugia malayi Bm1_42995 N 0.000
BDBG_01721 Blastomyces dermatitidis BDBG_01721 N 0.000
BC1G_12211 Botrytis cinerea BC1G_12211 N 0.000
ARB_00984 Arthroderma benhamiae ARB_00984 N 0.000
AMAG_14219 Allomyces macrogynus AMAG_14219 N 0.000
CPSG_08784 Coccidioides posadasii CPSG_08784 N 0.000
CTRG_05813 Candida tropicalis CTRG_05813 N 0.000
DEHA0G05258g Debaryomyces hansenii DEHA0G05258g N 0.000
RO3G_00885 Rhizopus oryzae RO3G_00885 N 0.000
PTTG_01898 Puccinia triticina PTTG_01898 N 0.000
PTSG_04415 Salpingoeca rosetta PTSG_04415 N 0.000
PITG_01680 Phytophthora infestans PITG_01680 N 0.000
PGUG_02960 Candida guilliermondii PGUG_02960 N 0.000
orf19.7618 Candida albicans orf19.7618 N 0.000
MGYG_04767 Microsporum gypseum MGYG_04767 N 0.000
MCYG_07269 Microsporum canis MCYG_07269 N 0.000
LOAG_05624 Loa loa LOAG_05624 N 0.000
LELG_05249 Lodderomyces elongisporus LELG_05249 N 0.000
HCAG_04100 Histoplasma capsulatum HCAG_04100 N 0.000
AMAG_12889 Allomyces macrogynus AMAG_12889 N 0.000
ENSCING00000009577 Ciona intestinalis ENSCING00000009577 N 0.000
B9GHH7_POPTR Populus trichocarpa POPTR_0001s47320 N 0.000
l(1)G0004 Drosophila melanogaster FBgn0027334 N 0.000
pno1 Xenopus tropicalis ENSXETG00000017349 N 0.000
PNO1 Vicugna pacos ENSVPAG00000012083 N 0.000
PNO1 Tursiops truncatus ENSTTRG00000014002 N 0.000
PNO1 Takifugu rubripes ENSTRUG00000012470 N 0.000
PNO1 Tetraodon nigroviridis ENSTNIG00000009825 N 0.000
PNO1 Taeniopygia guttata ENSTGUG00000002369 N 0.000
PNO1 Sus scrofa ENSSSCG00000008352 N 0.000
Pno1 Rattus norvegicus ENSRNOG00000005524 N 0.000
PNO1 Pteropus vampyrus ENSPVAG00000012695 N 0.000
PNO1 Pan troglodytes ENSPTRG00000011999 N 0.000
GE17874 Drosophila yakuba FBgn0068478 N 0.000
GA11169-RA Drosophila pseudoobscura FBgn0071224 N 0.000
GF20246 Drosophila ananassae FBgn0097253 N 0.000
PHUM356890 Pediculus humanus PHUM356890 N 0.000
LOC_Os03g02420 Oryza sativa LOC_Os03g02420 N 0.000
LOC_Os01g57910 Oryza sativa LOC_Os01g57910 N 0.000
PNO1_IXOSC Ixodes scapularis ISCW023560 N 0.000
GK20148 Drosophila willistoni FBgn0222145 N 0.000
GJ15820 Drosophila virilis FBgn0203007 N 0.000
GD17488 Drosophila simulans FBgn0189040 N 0.000
GM23025 Drosophila sechellia FBgn0177893 N 0.000
GI11042 Drosophila mojavensis FBgn0133805 N 0.000
GH12628 Drosophila grimshawi FBgn0120107 N 0.000
GG19285 Drosophila erecta FBgn0111489 N 0.000
ENSPPYG00000012353 Pongo pygmaeus ENSPPYG00000012353 N 0.000
PNO1 Procavia capensis ENSPCAG00000016146 N 0.000
Q6VBQ6_ORYLA Oryzias latipes ENSORLG00000002371 N 0.000
PNO1 Gorilla gorilla ENSGGOG00000009158 N 0.000
PNO1_CHICK Gallus gallus ENSGALG00000009093 N 0.000
PNO1 Gasterosteus aculeatus ENSGACG00000012047 N 0.000
PNO1 Homo sapiens ENSG00000115946 N 0.000
PNO1 Erinaceus europaeus ENSEEUG00000009611 N 0.000
LOC100061904 Equus caballus ENSECAG00000011263 N 0.000
Pno1 Dipodomys ordii ENSDORG00000006867 N 0.000
pno1 Danio rerio ENSDARG00000008502 N 0.000
ENSCSAVG00000001303 Ciona savignyi ENSCSAVG00000001303 N 0.000
PNO1 Cavia porcellus ENSCPOG00000010130 N 0.000
ENSCJAG00000022611 Callithrix jacchus ENSCJAG00000022611 N 0.000
PNO1 Loxodonta africana ENSLAFG00000000046 N 0.000
PNO1 Macropus eugenii ENSMEUG00000004504 N 0.000
PNO1 Meleagris gallopavo ENSMGAG00000004514 N 0.000
PNO1 Ochotona princeps ENSOPRG00000009643 N 0.000
ENSOCUG00000022236 Oryctolagus cuniculus ENSOCUG00000022236 N 0.000
ENSOCUG00000006100 Oryctolagus cuniculus ENSOCUG00000006100 N 0.000
PNO1 Ornithorhynchus anatinus ENSOANG00000008388 N 0.000
Pno1 Mus musculus ENSMUSG00000020116 N 0.000
PNO1 Monodelphis domestica ENSMODG00000003567 N 0.000
XM_001095777.1 Macaca mulatta ENSMMUG00000030357 N 0.000
Q7YRC8_MACMU Macaca mulatta ENSMMUG00000017461 N 0.000
XM_001110046.1 Macaca mulatta ENSMMUG00000003556 N 0.000
PNO1 Myotis lucifugus ENSMLUG00000010850 N 0.000
PNO1 Microcebus murinus ENSMICG00000010897 N 0.000
LOC100389955 Callithrix jacchus ENSCJAG00000006564 N 0.000