Glyma17g36330.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma17g36330.1 T52901_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.734
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma17g36330.1 RRM 77 146
Glyma17g36330.1 RRM 170 241
Glyma17g36330.1 RRM 273 337

Links

Other RRM family RBPs
Other Glycine max RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa005903m Prunus persica ppa005903m I 0.918
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.734
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.986
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.807
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.872
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.928
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.802
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.725
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.870
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.875
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.700
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.712
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.734
mgf000380m Mimulus guttatus mgf000380m I 0.729
ppa005661m Prunus persica ppa005661m I 0.773
MDP0000200455 Malus x domestica MDP0000200455 I 0.913
MDP0000136330 Malus x domestica MDP0000136330 I 0.913
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.957
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.783
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.768
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.855
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.783
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.778
mgf012795m Mimulus guttatus mgf012795m I 0.821
mgf011075m Mimulus guttatus mgf011075m I 0.754
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.712
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.712
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.712
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.787
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.850
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.744
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.739
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.792
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.744
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.734
PK15272.1 Cannabis sativa PK15272.1 I 0.787
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.913
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.797
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.778
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.712
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.913
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.787
30170.m014217 Ricinus communis 30170.m014217 I 0.932
PK00840.1 Cannabis sativa PK00840.1 I 0.913
29801.m003218 Ricinus communis 29801.m003218 I 0.792
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.923
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.792
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.762
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.752
MDP0000176892 Malus x domestica MDP0000176892 N 0.858
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.783
BRADI3G46470 Brachypodium distachyon BRADI3G46470 N 0.715
SB06G018280 Sorghum bicolor Sb06g018280 N 0.700
mgf013285m Mimulus guttatus mgf013285m N 0.792
XM_002863704.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000474 N 0.708