PCBP4 (Ornithorhynchus anatinus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSOANG00000014110 T19172_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.758
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.726
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.726
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.716
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOANP00000022257 KH 18 79
ENSOANP00000022257 KH 103 166
ENSOANP00000022257 KH 243 305
ENSOANP00000022258 KH 18 79
ENSOANP00000022258 KH 103 166
ENSOANP00000022258 KH 243 305
ENSOANP00000022259 KH 10 45
ENSOANP00000022259 KH 69 100
ENSOANP00000022259 KH 147 184
ENSOANP00000022259 KH 261 323

Links

Other KH family RBPs
Other Ornithorhynchus anatinus RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A6MK33_CALJA Callithrix jacchus ENSCJAG00000005783 I 0.968
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.700
AAH41241 Xenopus laevis AAH41241 I 0.732
AAH84195 Xenopus laevis AAH84195 I 0.732
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.716
Ame_R007066 Ailuropoda melanoleuca Ame_R007066 N 0.941
CAB50743 Xenopus laevis CAB50743 I 0.732
CAD29864 Xenopus laevis CAD29864 I 0.732
D3ZWQ9_RAT Rattus norvegicus ENSRNOG00000038946 N 0.799
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.726
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.795
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.721
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.726
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.725
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.705
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.711
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.726
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.758
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.726
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.726
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.721
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.716
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.742
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.726
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.716
ENSPPYG00000013822 Pongo pygmaeus ENSPPYG00000013822 I 0.968
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.711
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.721
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.720
LOC100050101 Equus caballus ENSECAG00000012413 I 0.758
LOC100050579 Equus caballus ENSECAG00000002544 I 0.716
LOC100060660 Equus caballus ENSECAG00000024218 I 0.968
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.716
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.758
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.705
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.716
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.716
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.716
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.711
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.716
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.705
PCBP1 Homo sapiens ENSG00000169564 D 0.716
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.716
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.716
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.716
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.716
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.726
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.726
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.726
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.726
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.726
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.726
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.726
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.726
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.726
PCBP2 Equus caballus ENSECAG00000022389 I 0.726
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.726
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.726
pcbp2 Danio rerio ENSDARG00000013184 D 0.726
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.726
PCBP2 Homo sapiens ENSG00000197111 D 0.726
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.742
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.742
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.758
PCBP3 Gallus gallus ENSGALG00000004394 I 0.737
PCBP3 Homo sapiens ENSG00000183570 I 0.758
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.758
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.758
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.742
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.737
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.758
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.742
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.758
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.732
PCBP3 Gallus gallus ENSGALG00000013155 I 0.789
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.758
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.758
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.758
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.758
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.758
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.737
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.710
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.717
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.784
PCBP4 Ochotona princeps ENSOPRG00000008763 N 0.941
PCBP4 Microcebus murinus ENSMICG00000002686 N 0.935
PCBP4 Cavia porcellus ENSCPOG00000014617 I 0.963
Pcbp4 Mus musculus ENSMUSG00000023495 I 0.968
PCBP4 Gorilla gorilla ENSGGOG00000012474 I 0.968
PCBP4 Canis familiaris ENSCAFG00000010019 I 0.968
PCBP4 Tursiops truncatus ENSTTRG00000001443 N 0.935
PCBP4 Monodelphis domestica ENSMODG00000011790 I 0.935
PCBP4 Procavia capensis ENSPCAG00000009515 N 0.947
PCBP4 Anolis carolinensis ENSACAG00000011701 I 0.947
PCBP4 Macaca mulatta ENSMMUG00000022205 I 0.968
PCBP4 Loxodonta africana ENSLAFG00000010732 N 0.825
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.783
PCBP4 Pan troglodytes ENSPTRG00000014983 I 0.968
PCBP4 Macropus eugenii ENSMEUG00000006917 N 0.953
PCBP4 Pteropus vampyrus ENSPVAG00000012474 N 0.941
Pcbp4 Rattus norvegicus ENSRNOG00000012406 I 0.968
PCBP4 Homo sapiens ENSG00000090097 I 0.968
PCBP4 Echinops telfairi ENSETEG00000001778 N 0.930
PCBP4 Oryctolagus cuniculus ENSOCUG00000025336 I 0.968
PCBP4 Spermophilus tridecemlineatus ENSSTOG00000002573 N 0.935
PCBP4 Taeniopygia guttata ENSTGUG00000006393 I 0.915
PCBP4 Oryzias latipes ENSORLG00000003061 I 0.720
PCBP4 Gasterosteus aculeatus ENSGACG00000002664 I 0.788
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.788
PCBP4_BOVIN Bos taurus ENSBTAG00000018622 I 0.968
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.747
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.726