CPEB2 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000052604 T36167_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.836
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.804
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.784
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000087189 RRM 1 54
ENSDARP00000087189 RRM 97 162

Links

Other RRM family RBPs
Other Danio rerio RBPs

142 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.818
AAEL012065 Aedes aegypti AAEL012065 I 0.815
ADH10187 Xenopus laevis ADH10187 I 0.818
AGAP002296 Anopheles gambiae AGAP002296 I 0.739
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.784
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.853
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.864
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.818
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.812
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.872
CPEB2 Homo sapiens ENSG00000137449 D 0.926
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.818
CPEB2 Sorex araneus ENSSARG00000010559 I 0.934
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.864
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.858
CPEB2 Gallus gallus ENSGALG00000014516 I 0.864
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.864
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.864
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.864
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.864
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.864
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.871
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.864
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.864
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.864
CPEB2 Equus caballus ENSECAG00000008722 I 0.864
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.864
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.880
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.934
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.864
CPEB2 Bos taurus ENSBTAG00000019847 I 0.864
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.797
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.864
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.872
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.864
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.864
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.864
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.864
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.847
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.853
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.853
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.853
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.853
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.709
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.853
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.853
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.848
CPEB3 Sorex araneus ENSSARG00000001994 I 0.847
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.826
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.853
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.853
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.757
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.848
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.846
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.853
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.847
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.853
CPEB3 Homo sapiens ENSG00000107864 I 0.853
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.846
cpeb3 Danio rerio ENSDARG00000060103 I 0.847
CPEB3 Gallus gallus ENSGALG00000006912 I 0.853
CPEB3 Equus caballus ENSECAG00000000077 I 0.847
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.853
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.847
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.860
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.853
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.853
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.853
CPEB3 Bos taurus ENSBTAG00000015450 I 0.853
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.853
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.853
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.818
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.818
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.818
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.730
CPEB4 Sorex araneus ENSSARG00000013389 I 0.803
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.873
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.818
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.818
CPEB4 Danio rerio ENSDARG00000060495 I 0.825
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.818
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.818
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.818
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.818
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.818
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.818
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.812
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.825
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.818
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.818
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.825
CPEB4 Gallus gallus ENSGALG00000014074 I 0.806
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.818
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.818
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.818
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.818
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.818
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.810
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.806
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.806
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.818
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.818
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.825
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.818
CPEB4 Homo sapiens ENSG00000113742 D 0.818
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.818
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.818
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.818
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.807
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.811
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.856
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.757
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.853
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.864
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.818
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.774
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.782
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.803
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.835
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.739
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.789
GE21274 Drosophila yakuba FBgn0238542 I 0.789
GF10140 Drosophila ananassae FBgn0087181 I 0.797
GG15051 Drosophila erecta FBgn0107305 I 0.789
GH16131 Drosophila grimshawi FBgn0123602 I 0.795
GI12400 Drosophila mojavensis FBgn0135157 I 0.789
GJ12289 Drosophila virilis FBgn0199538 I 0.789
GK17460 Drosophila willistoni FBgn0219459 I 0.789
GL20808 Drosophila persimilis FBgn0158403 I 0.789
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.842
ISCW010113 Ixodes scapularis ISCW010113 I 0.806
LOC100058918 Equus caballus ENSECAG00000016921 I 0.818
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.853
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.864
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.781
orb2 Drosophila melanogaster FBgn0262573 D 0.789
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.765
PHUM335520 Pediculus humanus PHUM335520 I 0.795
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.821
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.710
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.821
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.864