estExt_Genewise1Plus.C_150169 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1Plus.C_150169 T51387_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.860
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.860
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_150169 RRM 5 67
estExt_Genewise1Plus.C_150169 RRM 117 182

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.721
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.721
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.775
AAH44265 Xenopus laevis AAH44265 I 0.791
AAH46668 Xenopus laevis AAH46668 I 0.783
AAH71160 Xenopus laevis AAH71160 I 0.713
AGAP004592 Anopheles gambiae AGAP004592 I 0.845
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.845
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.721
Ame_R005284 Ailuropoda melanoleuca Ame_R005284 N 0.000
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.775
B52 Drosophila melanogaster FBgn0004587 D 0.860
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.814
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.845
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.845
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.775
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.721
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.705
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.705
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.775
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.721
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.775
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.760
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.729
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.767
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.806
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.760
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.853
GF17608 Drosophila ananassae FBgn0094626 I 0.860
GH18528 Drosophila grimshawi FBgn0125995 I 0.853
GI22065 Drosophila mojavensis FBgn0144794 I 0.853
GJ24113 Drosophila virilis FBgn0211197 I 0.853
GK13948 Drosophila willistoni FBgn0215954 I 0.860
GL23543 Drosophila persimilis FBgn0161133 I 0.853
ISCW010321 Ixodes scapularis ISCW010321 I 0.775
ISCW010322 Ixodes scapularis ISCW010322 I 0.713
ISCW014220 Ixodes scapularis ISCW014220 I 0.752
LOC100053264 Equus caballus ENSECAG00000026873 I 0.721
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.775
PHUM290500 Pediculus humanus PHUM290500 I 0.837
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.705
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.775
SFRS4 Gallus gallus ENSGALG00000001411 N 0.000
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.729
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.721
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.767
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.760
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.767
Srsf4 Mus musculus ENSMUSG00000028911 I 0.775
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.760
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.760
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.775
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.760
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.767
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.775
SRSF4 Gorilla gorilla ENSGGOG00000002444 N 0.000
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.775
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.775
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.775
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.775
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.775
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.775
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.767
SRSF4 Homo sapiens ENSG00000116350 I 0.775
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.775
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.775
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.729
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.729
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.775
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.767
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.775
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.775
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.775
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.721
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.000
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.000
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.713
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.721
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.721
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.721
Srsf5 Mus musculus ENSMUSG00000021134 I 0.721
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.721
SRSF5 Homo sapiens ENSG00000100650 D 0.721
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.729
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.721
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.721
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.721
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.721
SRSF5 Felis catus ENSFCAG00000008848 I 0.721
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.721
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.721
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.729
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.721
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.713
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.721
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.721
srsf5a Danio rerio ENSDARG00000029818 I 0.721
srsf5b Danio rerio ENSDARG00000027734 I 0.000
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.791
SRSF6 Homo sapiens ENSG00000124193 I 0.775
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.775
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.760
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.752
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.775
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.736
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.775
SRSF6 Choloepus hoffmanni ENSCHOG00000000561 N 0.000
SRSF6 Gallus gallus ENSGALG00000000990 N 0.000
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.775
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.760
SRSF6 Sus scrofa ENSSSCG00000007362 N 0.000
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.767
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.783
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.798
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.783
SRSF6 Otolemur garnettii ENSOGAG00000014468 N 0.000
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.767
Srsf6 Mus musculus ENSMUSG00000016921 I 0.760
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.767
SRSF6 Macaca mulatta ENSMMUG00000006742 N 0.000
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.767
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.791
srsf6a Danio rerio ENSDARG00000013729 I 0.791
srsf6b Danio rerio ENSDARG00000016783 I 0.767
SRSF6_RABIT Oryctolagus cuniculus ENSOCUG00000009785 N 0.000
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.705
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.798
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.744
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.798