PredSwiss_CON1238.1 (Pneumocystis carinii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PredSwiss_CON1238.1 T54672_0.6 Pneumocystis Genome Project (2010-Oct-5)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PredSwiss_CON1238.1 RRM 31 101

Links

Other RRM family RBPs
Other Pneumocystis carinii RBPs

135 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL002461 Aedes aegypti AAEL002461 N 0.746
ACLA_012010 Aspergillus clavatus CADACLAG00000982 N 0.746
AGAP000977 Anopheles gambiae AGAP000977 N 0.718
Ame_R006638 Ailuropoda melanoleuca Ame_R006638 N 0.778
An07g05140 Aspergillus niger CADANGAG00005786 N 0.789
ANIA_04665 Aspergillus nidulans CADANIAG00005768 N 0.775
Aqu1.200557 Amphimedon queenslandica Aqu1.200557 N 0.746
Aqu1.228439 Amphimedon queenslandica Aqu1.228439 N 0.732
ARB_06649 Arthroderma benhamiae ARB_06649 N 0.732
ATEG_05773 Aspergillus terreus CADATEAG00002943 N 0.761
BC1G_09608 Botrytis cinerea BC1G_09608 N 0.746
BDBG_01138 Blastomyces dermatitidis BDBG_01138 N 0.761
Bm1_02690 Brugia malayi Bm1_02690 N 0.718
CC1G_01457 Coprinopsis cinerea CC1G_01457 N 0.704
CG10466 Drosophila melanogaster FBgn0032822 N 0.732
CIMG_06780 Coccidioides immitis CIMG_06780 N 0.761
CMU_016700 Cryptosporidium muris CMU_016700 N 0.704
CPSG_07351 Coccidioides posadasii CPSG_07351 N 0.761
CRE26315 Caenorhabditis remanei CRE26315 N 0.704
cwf29 Schizosaccharomyces pombe SPBC887.05c N 0.718
DGIL_AUG5s13597g2t1 Acyrtosiphon pisum DGIL_AUG5s13597g2t1 N 0.761
ENSCSAVG00000001047 Ciona savignyi ENSCSAVG00000001047 N 0.718
ENSGGOG00000016146 Gorilla gorilla ENSGGOG00000016146 N 0.764
ENSGGOG00000026106 Gorilla gorilla ENSGGOG00000026106 N 0.736
ENSLAFG00000028277 Loxodonta africana ENSLAFG00000028277 N 0.761
ENSMLUG00000010298 Myotis lucifugus ENSMLUG00000010298 N 0.778
ENSMLUG00000017095 Myotis lucifugus ENSMLUG00000017095 N 0.789
ENSMODG00000019800 Monodelphis domestica ENSMODG00000019800 N 0.764
ENSOGAG00000006237 Otolemur garnettii ENSOGAG00000006237 N 0.778
ENSOGAG00000009060 Otolemur garnettii ENSOGAG00000009060 N 0.736
ENSPPYG00000020717 Pongo pygmaeus ENSPPYG00000020717 N 0.750
estExt_fgenesh1_pg.C_30395 Batrachochytrium dendrobatidis estExt_fgenesh1_pg.C_30395 N 0.732
estExt_fgenesh1_pg.C_410012 Monosiga brevicollis estExt_fgenesh1_pg.C_410012 N 0.746
estExt_fgenesh1_pg.C_chr_10724 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_10724 N 0.718
estExt_fgenesh2_kg.C_140042 Agaricus bisporus estExt_fgenesh2_kg.C_140042 N 0.704
estExt_fgenesh2_kg.C_42587 Serpula lacrymans estExt_fgenesh2_kg.C_42587 N 0.732
estExt_fgenesh3_pg.C_500008 Postia placenta estExt_fgenesh3_pg.C_500008 N 0.746
estExt_Genewise1Plus.C_10678 Schizophyllum commune estExt_Genewise1Plus.C_10678 N 0.704
estExt_Genewise1Plus.C_110324 Daphnia pulex estExt_Genewise1Plus.C_110324 N 0.817
e_gw1.1.4685.1 Myceliophthora thermophila e_gw1.1.4685.1 N 0.718
e_gw1.1.5996.1 Thielavia terrestris e_gw1.1.5996.1 N 0.718
e_gw1.12.826.1 Trichoderma virens e_gw1.12.826.1 N 0.718
fgenesh1_pg.00771_#_290 Aspergillus carbonarius fgenesh1_pg.00771_#_290 N 0.761
fgenesh1_pm.C_scaffold_1000287 Mycosphaerella fijiensis fgenesh1_pm.C_scaffold_1000287 N 0.718
fgenesh2_pg.C_sca_10000115 Lottia gigantea fgenesh2_pg.C_sca_10000115 N 0.761
GA10331-RA Drosophila pseudoobscura FBgn0070389 N 0.746
GD24233 Drosophila simulans FBgn0195582 N 0.732
GE13281 Drosophila yakuba FBgn0230967 N 0.732
GF14433 Drosophila ananassae FBgn0091460 N 0.746
GG21207 Drosophila erecta FBgn0113387 N 0.746
GH13830 Drosophila grimshawi FBgn0121306 N 0.718
GI11259 Drosophila mojavensis FBgn0134020 N 0.761
GI11260 Drosophila mojavensis FBgn0134021 N 0.761
GI20215 Drosophila mojavensis FBgn0142951 N 0.761
GJ13600 Drosophila virilis FBgn0200822 N 0.761
GK14925 Drosophila willistoni FBgn0216930 N 0.746
GL26176 Drosophila persimilis FBgn0163758 N 0.746
GM17378 Drosophila sechellia FBgn0172288 N 0.732
GSTUMT00000089001 Tuber melanosporum GSTUMT00000089001 N 0.761
gw.130.169.1 Nematostella vectensis gw.130.169.1 N 0.704
gw1.1.2244.1 Trichoplax adhaerens gw1.1.2244.1 N 0.718
gw1.1.2440.1 Mucor circinelloides gw1.1.2440.1 N 0.761
gw1.1.3012.1 Tremella mesenterica gw1.1.3012.1 N 0.704
gw1.16.255.1 Trichoderma reesei gw1.16.255.1 N 0.746
gw1.4.1321.1 Pleurotus ostreatus gw1.4.1321.1 N 0.704
gw1.4.2036.1 Heterobasidion annosum gw1.4.2036.1 N 0.718
gw1.462.53.1 Capitella teleta gw1.462.53.1 N 0.732
gw1.5.1175.1 Trichoderma atroviride gw1.5.1175.1 N 0.704
gwh2.2.841.1 Phanerochaete chrysosporium gwh2.2.841.1 N 0.718
HCAG_00719 Histoplasma capsulatum HCAG_00719 N 0.732
KLLA0D13420g Kluyveromyces lactis KLLA0D13420g N 0.704
LOC100058600 Equus caballus ENSECAG00000008257 N 0.778
LOC100388331 Callithrix jacchus ENSCJAG00000002436 N 0.778
LOC534630 Bos taurus ENSBTAG00000006252 N 0.761
LOC613705 Bos taurus ENSBTAG00000014771 N 0.732
MCYG_01624 Microsporum canis MCYG_01624 N 0.732
MGYG_04448 Microsporum gypseum MGYG_04448 N 0.718
nasonia_NCBI_hmm382923 Nasonia vitripennis nasonia_NCBI_hmm382923 N 0.732
NCLIV_024340 Neospora caninum NCLIV_024340 N 0.718
NFIA_078760 Neosartorya fischeri CADNFIAG00007376 N 0.746
PABG_03870 Paracoccidioides brasiliensis PABG_03870 N 0.746
Pa_1_22200 Podospora anserina Pa_1_22200 N 0.718
PBANKA_080580 Plasmodium berghei PBANKA_080580 N 0.704
Pc22g16450 Penicillium chrysogenum Pc22g16450 N 0.775
PCHAS_080610 Plasmodium chabaudi PCHAS_080610 N 0.704
PFC0865w Plasmodium falciparum PFC0865w N 0.704
PHUM617480 Pediculus humanus PHUM617480 N 0.746
PKH_082150 Plasmodium knowlesi PKH_082150 N 0.732
PMAA_079770 Penicillium marneffei PMAA_079770 N 0.746
PredSwiss_ASS2010_4174.1 Pneumocystis carinii PredSwiss_ASS2010_4174.1 N 0.718
PVX_095260 Plasmodium vivax PVX_095260 N 0.732
RBMX2 Anolis carolinensis ENSACAG00000008819 N 0.750
RBMX2 Microcebus murinus ENSMICG00000015139 N 0.778
RBMX2 Meleagris gallopavo ENSMGAG00000001801 N 0.750
RBMX2 Macropus eugenii ENSMEUG00000010913 N 0.778
RBMX2 Loxodonta africana ENSLAFG00000017625 N 0.757
RBMX2 Gorilla gorilla ENSGGOG00000023687 N 0.778
RBMX2 Gallus gallus ENSGALG00000004025 N 0.764
RBMX2 Gasterosteus aculeatus ENSGACG00000001855 N 0.732
RBMX2 Homo sapiens ENSG00000134597 N 0.778
RBMX2 Echinops telfairi ENSETEG00000001763 N 0.764
RBMX2 Erinaceus europaeus ENSEEUG00000000839 N 0.764
rbmx2 Danio rerio ENSDARG00000044380 N 0.789
RBMX2 Cavia porcellus ENSCPOG00000006640 N 0.764
RBMX2 Macaca mulatta ENSMMUG00000008389 N 0.778
Rbmx2 Mus musculus ENSMUSG00000031107 N 0.792
RBMX2 Tarsius syrichta ENSTSYG00000010611 N 0.761
Rbmx2 Rattus norvegicus ENSRNOG00000007371 N 0.792
RBMX2 Tursiops truncatus ENSTTRG00000016210 N 0.778
RBMX2 Takifugu rubripes ENSTRUG00000001699 N 0.775
RBMX2 Tetraodon nigroviridis ENSTNIG00000007672 N 0.789
RBMX2 Spermophilus tridecemlineatus ENSSTOG00000015391 N 0.778
RBMX2 Sorex araneus ENSSARG00000007350 N 0.761
RBMX2 Canis familiaris ENSCAFG00000018770 N 0.757
RBMX2 Pteropus vampyrus ENSPVAG00000004425 N 0.778
RBMX2 Ornithorhynchus anatinus ENSOANG00000001362 N 0.703
RBMX2 Oryctolagus cuniculus ENSOCUG00000011809 N 0.753
RBMX2 Oryzias latipes ENSORLG00000013183 N 0.732
RBMX2 Procavia capensis ENSPCAG00000012903 N 0.750
Sjc_0109550 Schistosoma japonicum Sjc_0109550 N 0.703
Smp_170230 Schistosoma mansoni Smp_170230 N 0.703
SPRG_07125 Saprolegnia parasitica SPRG_07125 N 0.732
SS1G_03313 Sclerotinia sclerotiorum SS1G_03313 N 0.746
TEQG_02324 Trichophyton equinum TEQG_02324 N 0.732
TERG_07863 Trichophyton rubrum TERG_07863 N 0.732
TESG_00774 Trichophyton tonsurans TESG_00774 N 0.732
TRV_02420 Trichophyton verrucosum TRV_02420 N 0.732
UREG_03685 Uncinocarpus reesii UREG_03685 N 0.746
WUBG_13107 Wuchereria bancrofti WUBG_13107 N 0.718
XM_001377711.1 Monodelphis domestica ENSMODG00000012002 N 0.764
XP_001110036.1 Macaca mulatta ENSMMUG00000020845 N 0.792
XP_001180915.1 Strongylocentrotus purpuratus XP_001180915.1 N 0.746
XP_002164481.1 Hydra magnipapillata XP_002164481.1 N 0.718
XP_791635.2 Strongylocentrotus purpuratus XP_791635.2 N 0.746
XR_023755.1 Pan troglodytes ENSPTRG00000022269 N 0.750