GRMZM2G087032 (Zea mays)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 GRMZM2G087032 T05712_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G087032_P01 CCCH ZF 74 100
GRMZM2G087032_P01 CCCH ZF 120 145
GRMZM2G087032_P01 CCCH ZF 165 191
GRMZM2G087032_P01 CCCH ZF 317 343
GRMZM2G087032_P01 CCCH ZF 363 389
GRMZM2G087032_P02 CCCH ZF 4 30
GRMZM2G087032_P03 CCCH ZF 10 35
GRMZM2G087032_P03 CCCH ZF 55 81
GRMZM2G087032_P03 CCCH ZF 207 233
GRMZM2G087032_P03 CCCH ZF 253 279
GRMZM2G087032_P04 CCCH ZF 74 100
GRMZM2G087032_P04 CCCH ZF 120 145

Links

Other CCCH ZF family RBPs
Other Zea mays RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.799
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.784
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.799
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.776
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.813
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.918
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.851
PK23881.1 Cannabis sativa PK23881.1 N 0.828
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.828
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.851
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.821
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.821
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.828
LjSGA_130253.1 Lotus japonicus LjSGA_130253.1 N 0.815
MDP0000178517 Malus x domestica MDP0000178517 N 0.731
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.724
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.828
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.793
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.793
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.799
mgf007299m Mimulus guttatus mgf007299m N 0.763
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.881
BGIOSIBCE034418 Oryza indica BGIOSIBCE034418 N 0.738
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.821
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.954
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.843
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.858
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.776
POPTR_0013s08500 Populus trichocarpa POPTR_0013s08500 N 0.778
ppa005813m Prunus persica ppa005813m N 0.828
30128.m009030 Ricinus communis 30128.m009030 N 0.828
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.741
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.993
SB05G013190 Sorghum bicolor Sb05g013190 N 0.821
GSVIVG00019119001 Vitis vinifera GSVIVG00019119001 N 0.766
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.799
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.993
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.821