NCBP2 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000002976 T35763_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000002703 RRM 42 112

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

138 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s15103g4t1 Acyrtosiphon pisum DGIL_AUG5s15103g4t1 N 0.775
DGIL_AUG5s12516g4t1 Acyrtosiphon pisum DGIL_AUG5s12516g4t1 N 0.803
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.803
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.972
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.704
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.718
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.831
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.831
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.873
XM_002863560.1 Arabidopsis lyrata fgenesh2_kg.8__389__AT5G44200.2 N 0.704
CBP20 Arabidopsis thaliana AT5G44200-TAIR-G N 0.704
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.732
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.817
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.972
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.704
BRADI3G48560 Brachypodium distachyon BRADI3G48560 N 0.732
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.831
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.831
Bm1_02935 Brugia malayi Bm1_02935 N 0.803
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.972
NCBP2L Canis familiaris ENSCAFG00000017990 N 0.761
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.972
PK11911.1 Cannabis sativa PK11911.1 N 0.718
estExt_Genewise1.C_5160046 Capitella teleta estExt_Genewise1.C_5160046 N 0.775
gw1.11.372.1 Chlorella vulgaris gw1.11.372.1 N 0.704
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.958
ENSCING00000016926 Ciona intestinalis ENSCING00000016926 N 0.775
ENSCING00000003079 Ciona intestinalis ENSCING00000003079 N 0.775
ENSCSAVG00000005823 Ciona savignyi ENSCSAVG00000005823 N 0.746
gw1.12.351.1 Coccomyxa C 169 gw1.12.351.1 N 0.704
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.732
CpipJ_CPIJ003555 Culex pipiens CpipJ_CPIJ003555 N 0.789
NCBP2_CULQU Culex quinquefasciatus CPIJ003555 N 0.789
ncbp2 Danio rerio ENSDARG00000014898 N 0.845
estExt_fgenesh1_kg.C_1730002 Daphnia pulex estExt_fgenesh1_kg.C_1730002 N 0.761
GF16759 Drosophila ananassae FBgn0093780 N 0.789
GG22670 Drosophila erecta FBgn0114835 N 0.789
GH15101 Drosophila grimshawi FBgn0122576 N 0.789
Cbp20 Drosophila melanogaster FBgn0022943 N 0.789
GI23717 Drosophila mojavensis FBgn0146442 N 0.789
GL12592 Drosophila persimilis FBgn0150198 N 0.789
GA11577-RA Drosophila pseudoobscura FBgn0071628 N 0.789
GM15280 Drosophila sechellia FBgn0170200 N 0.789
GD19204 Drosophila simulans FBgn0190709 N 0.789
GJ23276 Drosophila virilis FBgn0210378 N 0.789
GJ18756 Drosophila virilis FBgn0205908 N 0.775
GK11244 Drosophila willistoni FBgn0213255 N 0.789
GE25514 Drosophila yakuba FBgn0242580 N 0.789
NCBP2L Equus caballus ENSECAG00000003478 N 0.732
NCBP2 Equus caballus ENSECAG00000016153 N 0.972
NCBP2 Gallus gallus ENSGALG00000006843 N 0.915
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.845
NCBP2 Gasterosteus aculeatus ENSGACG00000006238 N 0.817
Glyma13g37030.1 Glycine max Glyma13g37030.1 N 0.732
Glyma12g33400.1 Glycine max Glyma12g33400.1 N 0.718
91084 Helobdella robusta 91084 N 0.817
NCBP2 Homo sapiens ENSG00000114503 N 0.972
XP_002166119.1 Hydra magnipapillata XP_002166119.1 N 0.803
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.831
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.803
LOAG_03270 Loa loa LOAG_03270 N 0.817
estExt_Genewise1.C_sca_180152 Lottia gigantea estExt_Genewise1.C_sca_180152 N 0.803
chr3.CM0160.780.nd Lotus japonicus chr3.CM0160.780.nd N 0.718
NCBP2L Loxodonta africana ENSLAFG00000027581 N 0.817
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.986
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.972
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.944
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.944
MDP0000315402 Malus x domestica MDP0000315402 N 0.718
cassava43645.valid.m1 Manihot esculenta cassava43645.valid.m1 N 0.732
cassava43646.valid.m1 Manihot esculenta cassava43646.valid.m1 N 0.732
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.915
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.845
NCBP2L Microcebus murinus ENSMICG00000016081 N 0.718
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.972
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.915
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.915
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.915
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.944
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.718
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.972
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.704
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.972
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.873
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.831
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.817
NCU00210 Neurospora crassa NCU00210 N 0.704
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.704
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.944
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.944
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.958
LOC_Os02g39890 Oryza sativa LOC_Os02g39890 N 0.718
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.845
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.972
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.972
PHUM535920 Pediculus humanus PHUM535920 N 0.845
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.746
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.732
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.718
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.972
A9PIB0_POPTR Populus trichocarpa POPTR_0007s01170 N 0.732
B9MYE5_POPTR Populus trichocarpa POPTR_0017s04640 N 0.704
Ppa-ncbp-2 Pristionchus pacificus PPA17381 N 0.718
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.986
ppa010346m Prunus persica ppa010346m N 0.718
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.958
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.972
29983.m003140 Ricinus communis 29983.m003140 N 0.704
Sjc_0008080 Schistosoma japonicum Sjc_0008080 N 0.718
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.704
NCBP2 Sorex araneus ENSSARG00000014294 N 0.873
SB04G025800 Sorghum bicolor Sb04g025800 N 0.746
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.958
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.789
XP_001187788.1 Strongylocentrotus purpuratus XP_001187788.1 N 0.732
XP_802051.1 Strongylocentrotus purpuratus XP_802051.1 N 0.732
NCBP2L Sus scrofa ENSSSCG00000012562 N 0.761
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.972
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.972
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.859
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.901
NCBP2 Takifugu rubripes ENSTRUG00000018355 N 0.873
NCBP2 Tetraodon nigroviridis ENSTNIG00000006065 N 0.859
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.704
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.732
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.718
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.704
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.972
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.958
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.958
GSVIVG00020599001 Vitis vinifera GSVIVG00020599001 N 0.732
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.817
CAA59259 Xenopus laevis CAA59259 N 0.859
AAH72902 Xenopus laevis AAH72902 N 0.873
2118330B Xenopus laevis 2118330B N 0.859
P52299 Xenopus laevis P52299 N 0.873
ncbp2 Xenopus tropicalis ENSXETG00000019384 N 0.901
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.746