nono (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000020482 T36099_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.727
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000014106 RRM 74 138
ENSDARP00000014106 RRM 148 211

Links

Other RRM family RBPs
Other Danio rerio RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R014248 Ailuropoda melanoleuca Ame_R014248 I 0.723
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.000
Ame_R017809 Ailuropoda melanoleuca Ame_R017809 I 0.727
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.718
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.000
SFPQ Bos taurus ENSBTAG00000016328 I 0.000
Q2KJ42_BOVIN Bos taurus ENSBTAG00000012152 I 0.727
PSPC1_BOVIN Bos taurus ENSBTAG00000003934 I 0.715
ENSCJAG00000035318 Callithrix jacchus ENSCJAG00000035318 I 0.000
TAF1 Callithrix jacchus ENSCJAG00000013390 I 0.727
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.723
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.712
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.000
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.000
LOC607081 Canis familiaris ENSCAFG00000003207 I 0.727
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.000
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.000
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.727
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.720
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.000
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.727
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.723
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.723
SFPQ Choloepus hoffmanni ENSCHOG00000009131 I 0.000
sfpq Danio rerio ENSDARG00000011564 I 0.000
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.000
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.715
SFPQ Echinops telfairi ENSETEG00000001095 I 0.000
LOC100069588 Equus caballus ENSECAG00000000642 I 0.000
NONO Equus caballus ENSECAG00000008502 I 0.727
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.727
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.721
PSPC1 Felis catus ENSFCAG00000013701 I 0.705
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.718
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.000
Q5ZIZ5_CHICK Gallus gallus ENSGALG00000005507 I 0.740
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.000
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.000
NONO Gorilla gorilla ENSGGOG00000006194 I 0.727
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.712
SFPQ Homo sapiens ENSG00000116560 D 0.000
PSPC1 Homo sapiens ENSG00000121390 I 0.723
NONO Homo sapiens ENSG00000147140 D 0.727
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.000
NONO Loxodonta africana ENSLAFG00000013422 I 0.727
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.723
LOC697263 Macaca mulatta ENSMMUG00000020481 I 0.727
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.723
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.000
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.000
NONO Macropus eugenii ENSMEUG00000004294 I 0.729
PSPC1 Macropus eugenii ENSMEUG00000000476 I 0.723
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.740
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.000
SFPQ Microcebus murinus ENSMICG00000011755 I 0.000
NONO Microcebus murinus ENSMICG00000000232 I 0.727
NONO Monodelphis domestica ENSMODG00000004445 I 0.735
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.723
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.000
Pspc1 Mus musculus ENSMUSG00000021938 I 0.723
Sfpq Mus musculus ENSMUSG00000028820 I 0.000
Nono Mus musculus ENSMUSG00000031311 I 0.727
NONO Myotis lucifugus ENSMLUG00000002489 I 0.000
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.723
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.000
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.000
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.727
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.000
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.723
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.000
NONO Otolemur garnettii ENSOGAG00000004834 I 0.727
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.723
XR_025068.1 Pan troglodytes ENSPTRG00000022010 I 0.727
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.000
ENSPPYG00000005186 Pongo pygmaeus ENSPPYG00000005186 I 0.723
ENSPPYG00000020451 Pongo pygmaeus ENSPPYG00000020451 I 0.727
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.000
SFPQ Procavia capensis ENSPCAG00000006164 I 0.000
NONO Procavia capensis ENSPCAG00000002541 I 0.727
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.727
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.715
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.000
Nono Rattus norvegicus ENSRNOG00000003689 I 0.727
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.723
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.000
ENSRNOG00000030425 Rattus norvegicus ENSRNOG00000030425 I 0.000
PSPC1 Sorex araneus ENSSARG00000000888 I 0.723
NONO Sorex araneus ENSSARG00000007959 I 0.720
NONO Spermophilus tridecemlineatus ENSSTOG00000015869 I 0.714
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.000
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.715
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.000
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.740
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.718
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.718
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.000
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.710
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.000
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.000
NONO Tursiops truncatus ENSTTRG00000009605 I 0.727
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.715
NONO Vicugna pacos ENSVPAG00000002272 I 0.727
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.000
AAH45128 Xenopus laevis AAH45128 I 0.777
BAE54372 Xenopus laevis BAE54372 I 0.777
nono Xenopus tropicalis ENSXETG00000020868 I 0.775
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.702