CPEB4 (Echinops telfairi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSETEG00000012142 T36960_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.870
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.819
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.768
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSETEP00000009859 RRM 484 538
ENSETEP00000009859 RRM 581 650

Links

Other RRM family RBPs
Other Echinops telfairi RBPs

141 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.796
AAEL012065 Aedes aegypti AAEL012065 I 0.752
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.826
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.891
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.841
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.819
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.891
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.841
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.775
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.783
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.891
CPEB3 Bos taurus ENSBTAG00000015450 I 0.841
CPEB2 Bos taurus ENSBTAG00000019847 I 0.826
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.833
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.826
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.841
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.826
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.891
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.891
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.826
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.841
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.766
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.891
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.826
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.826
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.835
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.725
CPEB2 Danio rerio ENSDARG00000052604 I 0.873
cpeb3 Danio rerio ENSDARG00000060103 I 0.827
CPEB4 Danio rerio ENSDARG00000060495 I 0.876
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.704
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.826
GF10140 Drosophila ananassae FBgn0087181 I 0.788
GG15051 Drosophila erecta FBgn0107305 I 0.781
GH16131 Drosophila grimshawi FBgn0123602 I 0.781
orb2 Drosophila melanogaster FBgn0262573 D 0.781
GI12400 Drosophila mojavensis FBgn0135157 I 0.781
GL20808 Drosophila persimilis FBgn0158403 I 0.781
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.781
GJ12289 Drosophila virilis FBgn0199538 I 0.781
GK17460 Drosophila willistoni FBgn0219459 I 0.781
GE21274 Drosophila yakuba FBgn0238542 I 0.781
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.833
CPEB3 Equus caballus ENSECAG00000000077 I 0.835
CPEB2 Equus caballus ENSECAG00000008722 I 0.826
LOC100058918 Equus caballus ENSECAG00000016921 I 0.891
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.891
CPEB3 Gallus gallus ENSGALG00000006912 I 0.841
CPEB4 Gallus gallus ENSGALG00000014074 I 0.878
CPEB2 Gallus gallus ENSGALG00000014516 I 0.826
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.869
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.876
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.812
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.797
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.891
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.841
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.826
CPEB4 Homo sapiens ENSG00000113742 D 0.891
CPEB3 Homo sapiens ENSG00000107864 I 0.841
CPEB2 Homo sapiens ENSG00000137449 D 0.897
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.755
ISCW010113 Ixodes scapularis ISCW010113 I 0.791
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.759
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.826
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.841
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.891
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.883
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.841
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.826
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.833
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.826
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.841
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.826
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.878
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.841
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.841
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.826
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.891
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.891
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.826
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.841
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.891
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.804
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.745
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.891
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.835
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.819
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.878
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.891
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.841
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.826
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.826
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.869
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.790
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.876
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.891
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.826
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.841
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.826
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.891
PHUM335520 Pediculus humanus PHUM335520 I 0.788
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.891
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.841
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.826
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.746
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.891
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.775
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.891
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.796
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.841
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.891
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.799
CPEB4 Sorex araneus ENSSARG00000013389 I 0.876
CPEB2 Sorex araneus ENSSARG00000010559 I 0.906
CPEB3 Sorex araneus ENSSARG00000001994 I 0.835
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.877
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.791
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.791
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.707
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.841
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.826
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.891
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.826
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.841
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.820
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.869
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.876
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.783
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.891
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.876
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.813
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.790
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.891
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.841
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.826
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.704
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.906
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.790
ADH10187 Xenopus laevis ADH10187 I 0.891
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.775
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.841