PABPN1L (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000005534 T40133_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000006962 RRM 66 135

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.000
AAEL015143 Aedes aegypti AAEL015143 I 0.000
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.714
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.000
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.000
AGAP005117 Anopheles gambiae AGAP005117 I 0.000
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.700
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.000
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.714
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.714
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.000
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.000
Bm1_48895 Brugia malayi Bm1_48895 I 0.000
CBN16301 Caenorhabditis brenneri CBN16301 I 0.000
CBN10290 Caenorhabditis brenneri CBN10290 I 0.000
CBN00953 Caenorhabditis brenneri CBN00953 I 0.000
CBG03741 Caenorhabditis briggsae CBG03741 I 0.000
pabp-2 Caenorhabditis elegans C17E4.5 I 0.000
CJA15148 Caenorhabditis japonica CJA15148 I 0.000
CRE07990 Caenorhabditis remanei CRE07990 I 0.000
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.714
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.714
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.000
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.000
PABPN1L Cavia porcellus ENSCPOG00000025951 I 0.000
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.714
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.000
ENSCSAVG00000002001 Ciona savignyi ENSCSAVG00000002001 I 0.000
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.000
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.000
pabpn1 Danio rerio ENSDARG00000045373 I 0.000
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.000
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.714
GF13666 Drosophila ananassae FBgn0090694 I 0.000
GG23338 Drosophila erecta FBgn0115489 I 0.000
GH21908 Drosophila grimshawi FBgn0129369 I 0.000
Pabp2 Drosophila melanogaster FBgn0005648 I 0.000
GI19259 Drosophila mojavensis FBgn0141998 I 0.000
GL17107 Drosophila persimilis FBgn0154711 I 0.000
GA15278-RA Drosophila pseudoobscura FBgn0075302 I 0.000
GM21011 Drosophila sechellia FBgn0175892 I 0.000
GD10545 Drosophila simulans FBgn0182316 I 0.000
GJ22134 Drosophila virilis FBgn0209248 I 0.000
GK23192 Drosophila willistoni FBgn0225154 I 0.000
Pabp2 Drosophila yakuba FBgn0068105 I 0.000
LOC100055599 Equus caballus ENSECAG00000011652 I 0.714
LOC100051357 Equus caballus ENSECAG00000000378 I 0.704
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.000
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.000
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.714
156918 Helobdella robusta 156918 I 0.000
PABPN1L Homo sapiens ENSG00000205022 I 0.000
PABPN1 Homo sapiens ENSG00000100836 D 0.714
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.000
LOAG_03634 Loa loa LOAG_03634 I 0.000
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.000
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.714
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.000
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.714
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.000
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.700
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.714
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.714
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.000
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.714
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.700
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.000
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.714
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.000
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.714
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.000
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.000
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.714
PHUM037550 Pediculus humanus PHUM037550 I 0.000
e_gwh2.2.847.1 Phanerochaete chrysosporium e_gwh2.2.847.1 I 0.000
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.714
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.000
PPA11675 Pristionchus pacificus PPA11675 I 0.000
PABPN1 Procavia capensis ENSPCAG00000005902 I 0.000
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.714
PGTG_01300 Puccinia graminis PGTG_01300 N 0.000
PTTG_05043 Puccinia triticina PTTG_05043 N 0.000
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.714
Sjc_0053490 Schistosoma japonicum Sjc_0053490 I 0.700
Smp_007630 Schistosoma mansoni Smp_007630 I 0.700
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.000
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.714
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.000
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.000
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.714
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.700
AAR26262 Xenopus laevis AAR26262 I 0.000
AAH73657 Xenopus laevis AAH73657 I 0.000
AAH45063 Xenopus laevis AAH45063 I 0.700
AAG36902 Xenopus laevis AAG36902 I 0.000
Q9DDY9 Xenopus laevis Q9DDY9 I 0.000
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.000