CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
ENSPPYG00000001326
(
Pongo pygmaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPPYG00000001326
T40434_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.807
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.807
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.807
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.786
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.721
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000001542
RRM
16
84
FIGGLSFETTDDGLREHFEKWGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVDAAMCARPHKVDGCVVE
ENSPPYP00000001542
RRM
106
172
IFVGGIKEDTEYNLRDYFEKYGKMESTEVMEDRQSKRGFALVTFDDHDTVDKIVVQKYHTINGHNCE
Links
Other
RRM
family RBPs
Other
Pongo pygmaeus
RBPs
115 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R011792
Ailuropoda melanoleuca
Ame_R011792
I
0.709
Ame_R015370
Ailuropoda melanoleuca
Ame_R015370
I
0.739
ENSACAG00000007169
Anolis carolinensis
ENSACAG00000007169
I
0.716
HNRNPA3
Anolis carolinensis
ENSACAG00000012234
I
0.797
LOC781499
Bos taurus
ENSBTAG00000021580
I
0.792
ROA1_BOVIN
Bos taurus
ENSBTAG00000001553
I
0.709
ENSCJAG00000033856
Callithrix jacchus
ENSCJAG00000033856
I
0.709
LOC100411573
Callithrix jacchus
ENSCJAG00000023383
I
0.792
ENSCJAG00000019479
Callithrix jacchus
ENSCJAG00000019479
I
0.709
ENSCJAG00000013441
Callithrix jacchus
ENSCJAG00000013441
N
0.719
ENSCJAG00000008584
Callithrix jacchus
ENSCJAG00000008584
I
0.777
ENSCJAG00000006928
Callithrix jacchus
ENSCJAG00000006928
I
0.716
LOC100397230
Callithrix jacchus
ENSCJAG00000004031
I
0.703
LOC100397230
Callithrix jacchus
ENSCJAG00000018864
I
0.709
XM_534786.2
Canis familiaris
ENSCAFG00000006580
I
0.709
ENSCAFG00000013497
Canis familiaris
ENSCAFG00000013497
I
0.792
HNRNPA3
Canis familiaris
ENSCAFG00000015889
I
0.755
ENSCAFG00000019118
Canis familiaris
ENSCAFG00000019118
I
0.708
ENSCAFG00000017316
Canis familiaris
ENSCAFG00000017316
I
0.710
ENSCAFG00000023240
Canis familiaris
ENSCAFG00000023240
I
0.839
HNRNPA3
Cavia porcellus
ENSCPOG00000011301
I
0.792
ENSCPOG00000004251
Cavia porcellus
ENSCPOG00000004251
I
0.799
ENSDNOG00000009228
Dasypus novemcinctus
ENSDNOG00000009228
I
0.709
HNRNPA3
Dasypus novemcinctus
ENSDNOG00000019022
I
0.792
ENSDORG00000011155
Dipodomys ordii
ENSDORG00000011155
I
0.728
LOC100066794
Equus caballus
ENSECAG00000023237
I
0.797
Q6DTK6_HORSE
Equus caballus
ENSECAG00000008676
I
0.709
ENSEEUG00000000925
Erinaceus europaeus
ENSEEUG00000000925
I
0.796
ENSFCAG00000010150
Felis catus
ENSFCAG00000010150
I
0.709
HNRNPA3
Felis catus
ENSFCAG00000012146
I
0.797
HNRPA3
Gallus gallus
ENSGALG00000009250
I
0.791
HNRNPA3
Gorilla gorilla
ENSGGOG00000006130
I
0.792
HNRNPA1
Gorilla gorilla
ENSGGOG00000003040
I
0.709
ENSGGOG00000025446
Gorilla gorilla
ENSGGOG00000025446
I
0.716
ENSGGOG00000022020
Gorilla gorilla
ENSGGOG00000022020
I
0.743
ENSG00000215492
Homo sapiens
ENSG00000215492
I
0.709
HNRNPA1
Homo sapiens
ENSG00000135486
D
0.709
HNRNPA3
Homo sapiens
ENSG00000170144
I
0.792
HNRNPA3
Loxodonta africana
ENSLAFG00000027712
I
0.735
ENSLAFG00000029587
Loxodonta africana
ENSLAFG00000029587
I
0.716
LOC710473
Macaca mulatta
ENSMMUG00000029402
I
0.716
LOC710473
Macaca mulatta
ENSMMUG00000012989
I
0.709
LOC710473
Macaca mulatta
ENSMMUG00000007928
I
0.701
LOC710473
Macaca mulatta
ENSMMUG00000007887
I
0.709
ENSMMUG00000001858
Macaca mulatta
ENSMMUG00000001858
I
0.792
HNRNPA3
Macropus eugenii
ENSMEUG00000013622
I
0.792
HNRNPA3
Meleagris gallopavo
ENSMGAG00000009565
I
0.791
HNRNPA3
Microcebus murinus
ENSMICG00000005513
I
0.733
HNRNPA3
Monodelphis domestica
ENSMODG00000019803
I
0.792
ENSMODG00000024570
Monodelphis domestica
ENSMODG00000024570
I
0.807
Gm8991
Mus musculus
ENSMUSG00000059179
I
0.791
Hnrnpa3
Mus musculus
ENSMUSG00000059005
I
0.792
Hnrnpa1
Mus musculus
ENSMUSG00000046434
I
0.709
ENSMLUG00000000648
Myotis lucifugus
ENSMLUG00000000648
I
0.709
HNRNPA3
Myotis lucifugus
ENSMLUG00000003906
I
0.792
ENSOPRG00000006107
Ochotona princeps
ENSOPRG00000006107
I
0.703
ENSOCUG00000028124
Oryctolagus cuniculus
ENSOCUG00000028124
I
0.709
ENSOCUG00000023674
Oryctolagus cuniculus
ENSOCUG00000023674
I
0.709
ENSOCUG00000023444
Oryctolagus cuniculus
ENSOCUG00000023444
I
0.709
ENSOCUG00000022568
Oryctolagus cuniculus
ENSOCUG00000022568
I
0.703
HNRNPA3
Oryctolagus cuniculus
ENSOCUG00000002743
I
0.785
ENSOCUG00000006431
Oryctolagus cuniculus
ENSOCUG00000006431
I
0.804
ENSOCUG00000013350
Oryctolagus cuniculus
ENSOCUG00000013350
I
0.709
ENSOCUG00000010985
Oryctolagus cuniculus
ENSOCUG00000010985
I
0.709
HNRNPA3
Pan troglodytes
ENSPTRG00000012676
I
0.792
HNRNPA1L2
Pan troglodytes
ENSPTRG00000032520
I
0.709
ROA1_PANTR
Pan troglodytes
ENSPTRG00000031363
I
0.709
ROA1_PANTR
Pan troglodytes
ENSPTRG00000028756
I
0.709
ENSPTRG00000018253
Pan troglodytes
ENSPTRG00000018253
I
0.728
ROA1_PANTR
Pan troglodytes
ENSPTRG00000005035
I
0.709
ENSPPYG00000013564
Pongo pygmaeus
ENSPPYG00000013564
N
0.759
ENSPPYG00000012967
Pongo pygmaeus
ENSPPYG00000012967
I
0.758
ENSPPYG00000001012
Pongo pygmaeus
ENSPPYG00000001012
I
0.772
HNRNPA3
Pteropus vampyrus
ENSPVAG00000010380
I
0.792
ENSPVAG00000000322
Pteropus vampyrus
ENSPVAG00000000322
I
0.709
ENSRNOG00000030901
Rattus norvegicus
ENSRNOG00000030901
I
0.730
D3ZTB7_RAT
Rattus norvegicus
ENSRNOG00000031608
I
0.777
ENSRNOG00000033211
Rattus norvegicus
ENSRNOG00000033211
I
0.807
Hnrnpa1
Rattus norvegicus
ENSRNOG00000036839
I
0.709
D3ZB90_RAT
Rattus norvegicus
ENSRNOG00000038392
N
0.816
D3ZXA3_RAT
Rattus norvegicus
ENSRNOG00000038905
I
0.791
ENSRNOG00000042377
Rattus norvegicus
ENSRNOG00000042377
I
0.818
D4A6Z0_RAT
Rattus norvegicus
ENSRNOG00000042924
N
0.743
ENSRNOG00000043173
Rattus norvegicus
ENSRNOG00000043173
I
0.801
ENSRNOG00000030250
Rattus norvegicus
ENSRNOG00000030250
I
0.817
D3ZB98_RAT
Rattus norvegicus
ENSRNOG00000029641
I
0.810
LOC100360986
Rattus norvegicus
ENSRNOG00000001556
I
0.792
D3ZNE1_RAT
Rattus norvegicus
ENSRNOG00000005671
I
0.740
D4A8U2_RAT
Rattus norvegicus
ENSRNOG00000007252
I
0.821
ENSRNOG00000013650
Rattus norvegicus
ENSRNOG00000013650
I
0.738
D3ZHS1_RAT
Rattus norvegicus
ENSRNOG00000017364
N
0.716
D4ACP9_RAT
Rattus norvegicus
ENSRNOG00000021929
I
0.780
ENSRNOG00000022655
Rattus norvegicus
ENSRNOG00000022655
N
0.723
ROA3_RAT
Rattus norvegicus
ENSRNOG00000027001
I
0.792
D3ZX95_RAT
Rattus norvegicus
ENSRNOG00000027006
I
0.741
D3ZK54_RAT
Rattus norvegicus
ENSRNOG00000025482
I
0.800
ENSRNOG00000024652
Rattus norvegicus
ENSRNOG00000024652
I
0.807
HNRNPA3
Sorex araneus
ENSSARG00000007605
I
0.750
ENSSSCG00000000288
Sus scrofa
ENSSSCG00000000288
I
0.709
HNRNPA3
Sus scrofa
ENSSSCG00000015988
I
0.792
ENSSSCG00000015989
Sus scrofa
ENSSSCG00000015989
I
0.725
HNRNPA3
Taeniopygia guttata
ENSTGUG00000008996
I
0.791
ENSTBEG00000008238
Tupaia belangeri
ENSTBEG00000008238
I
0.709
HNRNPA3
Tupaia belangeri
ENSTBEG00000017108
N
0.734
ENSTTRG00000015563
Tursiops truncatus
ENSTTRG00000015563
I
0.770
HNRNPA3
Tursiops truncatus
ENSTTRG00000014225
I
0.792
ENSTTRG00000004505
Tursiops truncatus
ENSTTRG00000004505
I
0.709
P51992
Xenopus laevis
P51992
I
0.747
P51968
Xenopus laevis
P51968
I
0.757
CBU92451
Xenopus laevis
CBU92451
I
0.747
CBF67578
Xenopus laevis
CBF67578
I
0.747
AAI69881
Xenopus laevis
AAI69881
I
0.747
AAA49950
Xenopus laevis
AAA49950
I
0.747
AAA49949
Xenopus laevis
AAA49949
I
0.757
hnrnpa3
Xenopus tropicalis
ENSXETG00000001806
I
0.764