AAH45063 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH45063 T59469_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.986
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH45063 RRM 164 233

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

108 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.800
AAEL015143 Aedes aegypti AAEL015143 I 0.814
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.986
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.746
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.986
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.729
AGAP005117 Anopheles gambiae AGAP005117 I 0.814
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.829
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.829
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.986
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.986
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.845
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.814
Bm1_48895 Brugia malayi Bm1_48895 I 0.859
CBN00953 Caenorhabditis brenneri CBN00953 I 0.743
CBN10290 Caenorhabditis brenneri CBN10290 I 0.743
CBG03741 Caenorhabditis briggsae CBG03741 I 0.743
CJA15148 Caenorhabditis japonica CJA15148 I 0.743
CRE07990 Caenorhabditis remanei CRE07990 I 0.743
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.986
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.986
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.829
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.786
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.986
PABPN1L Cavia porcellus ENSCPOG00000025951 I 0.704
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.718
ENSCSAVG00000002001 Ciona savignyi ENSCSAVG00000002001 I 0.704
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.814
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.814
pabpn1 Danio rerio ENSDARG00000045373 I 0.930
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.814
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.986
GF13666 Drosophila ananassae FBgn0090694 I 0.786
GG23338 Drosophila erecta FBgn0115489 I 0.786
GH21908 Drosophila grimshawi FBgn0129369 I 0.786
Pabp2 Drosophila melanogaster FBgn0005648 I 0.786
GI19259 Drosophila mojavensis FBgn0141998 I 0.786
GL17107 Drosophila persimilis FBgn0154711 I 0.771
GA15278-RA Drosophila pseudoobscura FBgn0075302 I 0.786
GM21011 Drosophila sechellia FBgn0175892 I 0.786
GD10545 Drosophila simulans FBgn0182316 I 0.786
GJ22134 Drosophila virilis FBgn0209248 I 0.786
GK23192 Drosophila willistoni FBgn0225154 I 0.786
Pabp2 Drosophila yakuba FBgn0068105 I 0.786
LOC100055599 Equus caballus ENSECAG00000011652 I 0.986
LOC100051357 Equus caballus ENSECAG00000000378 I 0.000
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.943
PABPN1 Gallus gallus ENSGALG00000006242 I 0.743
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.915
PABPN1L Gasterosteus aculeatus ENSGACG00000015428 I 0.714
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.986
156918 Helobdella robusta 156918 I 0.771
PABPN1 Homo sapiens ENSG00000100836 D 0.986
PABPN1L Homo sapiens ENSG00000205022 I 0.729
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.771
LOAG_03634 Loa loa LOAG_03634 I 0.859
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.803
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.986
PABPN1L Loxodonta africana ENSLAFG00000025902 I 0.714
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.743
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.743
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.986
EDP44971.1 Malassezia globosa EDP44971.1 N 0.700
PABPN1L Monodelphis domestica ENSMODG00000003873 N 0.000
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.943
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.986
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.957
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.789
SNAPOd2T00003132001 Oikopleura dioica SNAPOd2T00003132001 I 0.714
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.971
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.714
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.986
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.929
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.915
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.704
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.986
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.986
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.729
PHUM037550 Pediculus humanus PHUM037550 I 0.829
e_gwh2.2.847.1 Phanerochaete chrysosporium e_gwh2.2.847.1 I 0.000
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.714
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.986
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.729
PPA11675 Pristionchus pacificus PPA11675 I 0.000
PABPN1 Procavia capensis ENSPCAG00000005902 I 0.843
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.986
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.714
PGTG_01300 Puccinia graminis PGTG_01300 N 0.700
PTTG_05043 Puccinia triticina PTTG_05043 N 0.700
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.986
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.718
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.986
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.743
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.915
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.915
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.743
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.886
UM02401 Ustilago maydis UM02401 N 0.700
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.859
Q7ZXB8 Xenopus laevis Q7ZXB8 I 1.000
AAR26262 Xenopus laevis AAR26262 I 0.986
AAH73657 Xenopus laevis AAH73657 I 0.986
AAG36902 Xenopus laevis AAG36902 I 0.986
Q9DDY9 Xenopus laevis Q9DDY9 I 0.986
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.986