AAH71160 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH71160 T59515_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.721
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH71160 RRM 6 68
AAH71160 RRM 116 181

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

129 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.783
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.791
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.783
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.783
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.783
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.783
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.775
LOC100053264 Equus caballus ENSECAG00000026873 I 0.783
SRSF5 Felis catus ENSFCAG00000008848 I 0.783
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.775
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.783
SRSF5 Homo sapiens ENSG00000100650 D 0.783
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.775
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.783
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.791
Srsf5 Mus musculus ENSMUSG00000021134 I 0.783
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.783
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.783
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.783
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.783
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.783
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.783
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.783
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.783
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.791
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.783
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.752
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.783
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.783
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.806