LOC_Os06g41384 (Oryza sativa)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		LOC_Os06g41384 T00172_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os06g41384.1 CCCH ZF 33 59
LOC_Os06g41384.1 CCCH ZF 100 125
LOC_Os06g41384.1 KH 168 230
LOC_Os06g41384.1 CCCH ZF 260 285
LOC_Os06g41384.2 CCCH ZF 33 59
LOC_Os06g41384.2 CCCH ZF 100 125
LOC_Os06g41384.2 KH 168 230
LOC_Os06g41384.2 CCCH ZF 260 285

Links

Other CCCH ZF,KH family RBPs
Other Oryza sativa RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.944
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.937
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.923
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.916
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.894
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.894
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.894
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.867
SB04G006450 Sorghum bicolor Sb04g006450 N 0.838
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.831
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.831
SB06G032000 Sorghum bicolor Sb06g032000 N 0.824
ppa009199m Prunus persica ppa009199m N 0.817
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.811
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.810
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.810
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.803
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.803
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.803
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.803
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.803
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.803
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.803
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.796
ppa009316m Prunus persica ppa009316m N 0.796
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.789
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.789
27843.m000161 Ricinus communis 27843.m000161 N 0.789
27843.m000162 Ricinus communis 27843.m000162 N 0.782
mgf003025m Mimulus guttatus mgf003025m N 0.775
MDP0000217837 Malus x domestica MDP0000217837 N 0.768
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.768
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.754
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.754
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.750
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.739
mgf010445m Mimulus guttatus mgf010445m N 0.739
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.739
MDP0000176924 Malus x domestica MDP0000176924 N 0.725
MDP0000202971 Malus x domestica MDP0000202971 N 0.725
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.725
MDP0000120315 Malus x domestica MDP0000120315 N 0.711
MDP0000130160 Malus x domestica MDP0000130160 N 0.711
MDP0000275117 Malus x domestica MDP0000275117 N 0.711