GRMZM2G056920 (Zea mays)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		GRMZM2G056920 T00211_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G056920_P01 CCCH ZF 35 59
GRMZM2G056920_P01 CCCH ZF 96 121
GRMZM2G056920_P01 KH 246 310
GRMZM2G056920_P01 CCCH ZF 324 349
GRMZM2G056920_P02 CCCH ZF 18 29
GRMZM2G056920_P02 CCCH ZF 66 91
GRMZM2G056920_P02 KH 216 280
GRMZM2G056920_P02 CCCH ZF 294 319

Links

Other CCCH ZF,KH family RBPs
Other Zea mays RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB04G006450 Sorghum bicolor Sb04g006450 N 0.866
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.812
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.812
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.793
ppa009199m Prunus persica ppa009199m N 0.768
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.754
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.750
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.750
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.748
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.748
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.746
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.746
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.743
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.739
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.739
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.738
SB06G032000 Sorghum bicolor Sb06g032000 N 0.734
MDP0000275117 Malus x domestica MDP0000275117 N 0.733
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.732
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.732
ppa009316m Prunus persica ppa009316m N 0.732
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.732
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.732
27843.m000162 Ricinus communis 27843.m000162 N 0.732
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.731
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.727
27843.m000161 Ricinus communis 27843.m000161 N 0.725
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.725
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.725
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.723
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.722
MDP0000120315 Malus x domestica MDP0000120315 N 0.722
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.713
MDP0000130160 Malus x domestica MDP0000130160 N 0.711
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.711
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.708
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.704