Ame_R018030 (Ailuropoda melanoleuca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Ame_R018030 T55647_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.894
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.894
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.894
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.872
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R018030 RRM 16 85
Ame_R018030 RRM 106 175

Links

Other RRM family RBPs
Other Ailuropoda melanoleuca RBPs

236 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.901
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.894
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.894
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.894
HNRNPA1 Homo sapiens ENSG00000135486 D 0.894
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.894
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.894
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.894
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.894
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.894
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.894
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.894
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.894
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.894
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.894
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.894
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.894
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.894
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.894
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.894
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.894
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.894
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.894
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.894
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.894
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.894
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.894
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.894
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.894
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.887
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.887
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.887
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.887
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.887
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.887
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.879
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.879
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.879
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.879
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.879
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.879
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.879
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.879
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.879
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.879
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.879
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.872
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.872
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.872
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.872
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.871
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.865
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.865
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.865
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.865
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.865
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.865
LOC785445 Bos taurus ENSBTAG00000025621 I 0.864
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.859
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.859
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.858
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.858
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.858
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.858
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.857
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.857
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.857
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.857
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.857
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.851
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.851
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.850
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.850
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.850
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.844
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.844
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.843
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.837
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.837
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.836
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.836
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.836
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.836
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.832
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.831
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.830
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.829
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.829
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.829
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.824
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.824
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.824
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.823
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.823
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.823
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.821
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.821
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.821
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.821
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.821
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.821
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.821
LOC100054206 Equus caballus ENSECAG00000006699 I 0.817
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.817
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.816
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.816
CBF67672 Xenopus laevis CBF67672 I 0.816
CBU92546 Xenopus laevis CBU92546 I 0.816
AAH72090 Xenopus laevis AAH72090 I 0.816
AAH45260 Xenopus laevis AAH45260 I 0.816
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.814
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.814
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.814
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.810
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.810
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.810
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.809
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.809
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.804
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.803
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.803
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.803
CBF67555 Xenopus laevis CBF67555 I 0.801
AAA49742 Xenopus laevis AAA49742 I 0.801
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.801
AAA49741 Xenopus laevis AAA49741 I 0.801
P17130 Xenopus laevis P17130 I 0.801
CBU92428 Xenopus laevis CBU92428 I 0.801
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.800
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.800
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.800
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.800
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.797
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.796
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.796
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.793
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.793
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.790
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.789
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.787
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.787
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.786
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.786
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.782
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.782
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.782
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.781
LOC100066794 Equus caballus ENSECAG00000023237 I 0.780
P51968 Xenopus laevis P51968 I 0.780
Gm8991 Mus musculus ENSMUSG00000059179 I 0.780
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.780
AAA49949 Xenopus laevis AAA49949 I 0.780
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.780
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.780
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.780
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.779
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.775
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.775
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.775
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.775
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.775
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.775
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.775
LOC781499 Bos taurus ENSBTAG00000021580 I 0.775
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.775
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.775
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.775
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.775
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.775
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.775
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.775
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.775
HNRNPA3 Homo sapiens ENSG00000170144 I 0.775
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.775
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.773
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.773
AAI69881 Xenopus laevis AAI69881 I 0.769
CBF67578 Xenopus laevis CBF67578 I 0.769
P51992 Xenopus laevis P51992 I 0.769
CBU92451 Xenopus laevis CBU92451 I 0.769
AAA49950 Xenopus laevis AAA49950 I 0.769
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.769
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.768
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.768
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.766
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.761
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.759
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.759
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.755
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.752
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.747
zgc:66127 Danio rerio ENSDARG00000011020 I 0.745
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.743
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.739
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.739
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.738
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.736
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.734
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.732
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.732
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.732
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.731
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.730
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.727
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.724
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.724
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.723
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.722
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.722
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.720
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.720
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.718
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.717
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.716
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.716
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.714
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.711
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.711
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.710
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.710
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.709
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.709
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.709
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.707
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.707
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.705
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.705
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.705
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.704
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.704
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.703
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.703
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.702
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.702
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.702
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.701