ENSSTOG00000015259 (Spermophilus tridecemlineatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSTOG00000015259 T41665_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.894
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.894
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.894
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.872
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000013674 RRM 15 78
ENSSTOP00000013674 RRM 100 169

Links

Other RRM family RBPs
Other Spermophilus tridecemlineatus RBPs

243 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.900
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.894
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.894
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.894
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.894
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.894
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.894
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.894
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.894
HNRNPA1 Homo sapiens ENSG00000135486 D 0.894
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.894
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.894
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.894
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.894
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.894
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.894
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.894
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.894
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.894
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.894
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.894
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.894
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.894
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.894
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.894
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.894
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.894
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.894
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.887
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.887
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.887
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.887
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.887
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.887
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.887
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.887
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.887
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.879
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.879
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.879
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.879
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.879
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.879
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.879
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.879
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.879
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.879
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.879
LOC785445 Bos taurus ENSBTAG00000025621 I 0.878
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.872
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.872
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.872
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.872
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.872
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.872
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.871
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.865
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.865
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.865
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.864
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.864
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.863
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.859
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.858
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.858
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.858
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.858
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.858
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.858
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.857
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.857
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.852
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.851
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.851
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.850
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.850
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.850
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.850
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.845
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.844
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.843
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.843
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.843
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.838
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.837
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.837
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.837
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.837
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.837
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.836
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.836
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.836
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.831
CBU92546 Xenopus laevis CBU92546 I 0.830
AAH72090 Xenopus laevis AAH72090 I 0.830
CBF67672 Xenopus laevis CBF67672 I 0.830
AAH45260 Xenopus laevis AAH45260 I 0.830
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.829
LOC100054206 Equus caballus ENSECAG00000006699 I 0.824
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.821
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.821
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.821
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.821
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.817
CBF67555 Xenopus laevis CBF67555 I 0.816
AAA49742 Xenopus laevis AAA49742 I 0.816
P17130 Xenopus laevis P17130 I 0.816
CBU92428 Xenopus laevis CBU92428 I 0.816
AAA49741 Xenopus laevis AAA49741 I 0.816
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.814
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.814
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.814
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.814
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.814
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.811
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.810
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.809
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.807
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.807
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.804
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.803
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.803
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.803
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.803
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.803
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.801
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.801
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.801
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.800
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.800
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.800
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.796
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.796
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.796
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.793
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.789
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.787
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.787
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.786
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.786
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.783
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.783
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.782
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.782
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.782
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.782
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.782
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.782
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.782
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.782
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.782
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.782
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.782
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.782
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.782
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.782
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.782
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.782
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.782
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.782
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.782
HNRNPA3 Homo sapiens ENSG00000170144 I 0.782
LOC781499 Bos taurus ENSBTAG00000021580 I 0.782
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.782
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.781
Gm8991 Mus musculus ENSMUSG00000059179 I 0.780
LOC100066794 Equus caballus ENSECAG00000023237 I 0.780
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.780
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.780
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.780
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.780
AAA49949 Xenopus laevis AAA49949 I 0.780
P51968 Xenopus laevis P51968 I 0.780
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.779
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.779
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.775
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.775
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.773
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.773
CBU92451 Xenopus laevis CBU92451 I 0.769
CBF67578 Xenopus laevis CBF67578 I 0.769
AAI69881 Xenopus laevis AAI69881 I 0.769
P51992 Xenopus laevis P51992 I 0.769
AAA49950 Xenopus laevis AAA49950 I 0.769
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.768
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.767
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.766
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.766
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.766
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.759
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.757
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.755
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.748
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.748
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.746
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.745
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.745
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.745
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.743
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.741
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.739
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.739
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.738
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.738
zgc:66127 Danio rerio ENSDARG00000011020 I 0.738
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.732
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.732
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.731
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.730
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.730
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.729
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.729
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.727
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.725
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.724
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.724
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.723
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.721
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.720
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.717
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.716
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.716
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.716
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.714
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.713
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.711
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.711
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.711
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.711
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.711
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.711
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.710
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.710
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.710
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.709
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.707
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.707
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.705
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.705
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.705
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.703
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.702
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.701