ENSCAFG00000024636 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000024636 T35217_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.750
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.750
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.750
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.743
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000033647 RRM 23 91
ENSCAFP00000033647 RRM 110 179

Links

Other RRM family RBPs
Other Canis familiaris RBPs

127 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.759
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.757
LOC100054206 Equus caballus ENSECAG00000006699 I 0.750
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.750
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.750
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.748
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.748
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.745
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.745
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.745
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.745
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.745
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.745
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.745
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.745
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.745
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.745
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.745
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.745
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.745
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.745
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.745
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.745
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.745
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.745
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.745
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.745
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.745
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.745
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.745
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.745
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.745
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.745
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.745
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.745
HNRNPA1 Homo sapiens ENSG00000135486 D 0.745
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.745
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.743
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.741
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.739
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.739
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.738
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.738
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.738
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.738
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.738
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.738
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.738
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.738
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.738
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.736
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.736
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.736
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.736
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.734
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.734
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.732
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.731
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.731
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.731
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.731
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.731
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.731
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.731
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.731
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.731
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.731
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.731
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.731
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.729
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.729
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.729
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.727
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.727
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.724
LOC785445 Bos taurus ENSBTAG00000025621 I 0.724
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.724
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.724
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.724
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.724
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.724
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.724
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.723
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.723
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.722
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.722
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.721
ENSGGOG00000022797 Gorilla gorilla ENSGGOG00000022797 I 0.721
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.719
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.718
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.717
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.717
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.717
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.717
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.717
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.717
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.717
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.715
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.715
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.715
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.714
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.714
ENSGGOG00000027762 Gorilla gorilla ENSGGOG00000027762 I 0.712
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.711
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.711
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.710
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.710
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.710
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.710
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.708
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.708
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.708
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.705
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.704
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.703
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.703
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.703
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.703
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.703
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.703
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.703
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.703
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.703
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.703
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.701
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.701
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.701