ENSCJAG00000033784 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000033784 T35724_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.872
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.872
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.872
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.851
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.709
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000035058 RRM 15 84
ENSCJAP00000035058 RRM 106 174

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

242 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.893
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.893
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.886
HNRNPA1 Homo sapiens ENSG00000135486 D 0.886
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.886
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.886
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.886
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.886
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.886
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.886
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.886
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.886
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.886
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.886
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.886
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.886
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.886
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.886
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.886
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.886
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.886
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.886
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.886
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.886
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.886
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.886
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.886
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.886
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.886
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.879
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.879
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.879
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.879
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.879
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.879
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.879
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.879
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.871
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.871
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.871
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.871
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.871
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.871
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.871
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.871
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.871
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.871
LOC785445 Bos taurus ENSBTAG00000025621 I 0.864
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.864
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.864
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.864
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.864
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.864
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.864
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.864
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.864
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.864
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.857
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.857
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.857
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.857
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.857
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.857
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.851
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.850
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.850
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.850
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.850
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.843
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.843
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.843
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.843
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.838
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.837
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.836
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.836
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.836
LOC100054206 Equus caballus ENSECAG00000006699 I 0.831
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.831
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.830
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.829
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.829
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.829
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.829
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.829
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.829
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.829
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.829
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.824
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.821
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.821
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.821
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.821
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.818
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.817
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.817
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.814
AAH45260 Xenopus laevis AAH45260 I 0.814
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.814
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.814
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.814
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.814
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.814
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.814
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.814
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.810
CBF67672 Xenopus laevis CBF67672 I 0.807
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.807
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.807
AAH72090 Xenopus laevis AAH72090 I 0.807
CBU92546 Xenopus laevis CBU92546 I 0.807
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.807
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.807
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.807
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.804
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.803
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.803
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.803
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.803
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.800
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.797
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.796
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.796
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.796
AAA49741 Xenopus laevis AAA49741 I 0.793
P17130 Xenopus laevis P17130 I 0.793
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.793
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.793
AAA49742 Xenopus laevis AAA49742 I 0.793
CBU92428 Xenopus laevis CBU92428 I 0.793
CBF67555 Xenopus laevis CBF67555 I 0.793
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.791
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.789
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.788
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.786
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.786
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.783
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.782
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.782
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.782
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.779
AAA49949 Xenopus laevis AAA49949 I 0.779
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.779
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.779
P51968 Xenopus laevis P51968 I 0.779
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.779
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.775
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.774
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.773
Gm8991 Mus musculus ENSMUSG00000059179 I 0.771
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.771
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.771
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.771
LOC100066794 Equus caballus ENSECAG00000023237 I 0.771
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.771
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.771
CBU92451 Xenopus laevis CBU92451 I 0.768
AAI69881 Xenopus laevis AAI69881 I 0.768
AAA49950 Xenopus laevis AAA49950 I 0.768
P51992 Xenopus laevis P51992 I 0.768
CBF67578 Xenopus laevis CBF67578 I 0.768
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.766
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.766
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.766
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.766
HNRNPA3 Homo sapiens ENSG00000170144 I 0.766
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.766
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.766
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.766
LOC781499 Bos taurus ENSBTAG00000021580 I 0.766
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.766
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.766
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.766
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.766
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.766
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.766
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.766
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.766
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.766
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.766
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.764
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.764
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.761
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.759
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.759
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.757
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.755
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.755
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.752
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.750
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.750
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.750
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.750
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.748
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.748
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.743
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.743
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.738
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.738
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.738
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.738
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.738
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.736
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.734
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.733
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.731
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.730
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.729
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.729
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.728
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.725
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.724
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.724
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.722
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.721
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.721
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.721
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.719
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.719
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.718
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.718
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.718
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.717
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.717
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.717
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.717
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.716
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.714
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.714
zgc:66127 Danio rerio ENSDARG00000011020 I 0.714
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.714
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.711
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.710
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.710
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.707
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.707
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.703
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.702
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.701
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.700
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.700
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.700