AAH97557 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH97557 T59591_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.821
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.821
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.821
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH97557 RRM 64 119
AAH97557 RRM 189 255
AAH97557 RRM 294 346
AAH97557 RRM 397 462

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAF00041 Xenopus laevis AAF00041 I 0.926
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.893
AAH45068 Xenopus laevis AAH45068 I 0.879
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.844
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.840
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.840
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.825
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.825
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.825
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.824
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.821
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.821
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.821
PTBP1 Homo sapiens ENSG00000011304 D 0.821
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.820
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.820
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.818
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.817
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.813
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.809
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.806
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.802
PTBP1 Equus caballus ENSECAG00000018845 I 0.798
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.770
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.766
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.764
ptbp1a Danio rerio ENSDARG00000019362 I 0.764
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.755
Rod1 Mus musculus ENSMUSG00000028382 I 0.755
ROD1 Sus scrofa ENSSSCG00000005466 I 0.754
ROD1 Equus caballus ENSECAG00000021243 I 0.754
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.751
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.751
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.747
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.747
ptbp1b Danio rerio ENSDARG00000031907 I 0.747
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.747
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.747
ROD1 Homo sapiens ENSG00000119314 I 0.747
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.747
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.747
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.743
ROD1 Bos taurus ENSBTAG00000016750 I 0.742
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.739
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.739
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.738
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.735
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.735
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.733
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.732
ROD1 Danio rerio ENSDARG00000043757 I 0.730
ROD1 Canis familiaris ENSCAFG00000003015 I 0.720
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.718
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.709
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.709
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.709
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.709
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.708
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.705
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.705
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.705
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.705
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.705
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.705
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.705
PTBP2 Homo sapiens ENSG00000117569 I 0.705
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.705
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.705
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.705
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.705
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.705
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.705
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.705
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.704
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.704
LOC100057336 Equus caballus ENSECAG00000015783 I 0.703
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.702
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.700