ENSSARG00000010620 (Sorex araneus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSARG00000010620 T41351_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.800
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.800
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.800
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.779
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSARP00000009571 RRM 16 85
ENSSARP00000009571 RRM 107 176

Links

Other RRM family RBPs
Other Sorex araneus RBPs

179 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.871
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.814
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.807
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.807
HNRNPA1 Homo sapiens ENSG00000135486 D 0.800
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.800
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.800
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.800
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.800
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.800
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.800
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.800
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.800
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.800
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.800
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.800
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.800
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.800
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.800
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.800
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.800
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.800
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.800
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.800
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.800
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.800
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.800
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.800
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.800
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.800
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.800
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.800
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.800
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.800
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.793
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.793
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.793
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.786
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.786
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.786
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.786
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.786
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.786
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.786
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.786
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.786
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.786
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.780
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.779
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.779
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.779
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.779
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.779
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.779
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.779
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.779
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.779
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.779
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.779
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.779
CBF67672 Xenopus laevis CBF67672 I 0.771
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.771
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.771
AAH45260 Xenopus laevis AAH45260 I 0.771
CBU92546 Xenopus laevis CBU92546 I 0.771
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.771
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.771
AAH72090 Xenopus laevis AAH72090 I 0.771
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.764
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.764
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.764
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.764
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.759
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.757
P17130 Xenopus laevis P17130 I 0.757
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.757
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.757
AAA49742 Xenopus laevis AAA49742 I 0.757
AAA49741 Xenopus laevis AAA49741 I 0.757
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.757
CBF67555 Xenopus laevis CBF67555 I 0.757
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.757
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.757
CBU92428 Xenopus laevis CBU92428 I 0.757
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.752
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.752
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.752
LOC785445 Bos taurus ENSBTAG00000025621 I 0.752
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.752
AAA49949 Xenopus laevis AAA49949 I 0.750
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.750
P51968 Xenopus laevis P51968 I 0.750
zgc:66127 Danio rerio ENSDARG00000011020 I 0.750
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.750
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.746
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.745
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.745
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.745
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.745
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.745
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.745
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.745
LOC781499 Bos taurus ENSBTAG00000021580 I 0.745
HNRNPA3 Homo sapiens ENSG00000170144 I 0.745
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.745
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.745
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.745
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.745
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.745
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.745
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.745
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.745
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.745
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.745
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.745
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.745
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.743
Gm8991 Mus musculus ENSMUSG00000059179 I 0.743
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.743
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.743
LOC100066794 Equus caballus ENSECAG00000023237 I 0.743
AAA49950 Xenopus laevis AAA49950 I 0.739
P51992 Xenopus laevis P51992 I 0.739
AAI69881 Xenopus laevis AAI69881 I 0.739
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.739
CBU92451 Xenopus laevis CBU92451 I 0.739
CBF67578 Xenopus laevis CBF67578 I 0.739
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.739
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.738
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.738
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.738
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.736
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.736
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.736
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.730
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.730
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.730
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.730
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.730
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.730
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.725
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.725
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.723
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.723
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.723
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.723
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.723
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.723
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.723
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.721
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.721
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.720
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.718
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.716
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.716
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.716
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.714
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.713
LOC100054206 Equus caballus ENSECAG00000006699 I 0.711
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.711
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.711
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.709
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.709
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.709
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.709
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.709
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.709
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.709
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.706
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.704
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.704
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.704
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.704
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.702
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.702
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.702
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.700