ENSSSCG00000005428 (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000005428 T41422_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.858
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.858
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.858
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.851
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000005823 RRM 27 96
ENSSSCP00000005823 RRM 118 187
ENSSSCP00000005824 RRM 16 85
ENSSSCP00000005824 RRM 107 174

Links

Other RRM family RBPs
Other Sus scrofa RBPs

211 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.865
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.865
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.858
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.858
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.858
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.858
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.858
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.858
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.858
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.858
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.858
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.858
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.858
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.858
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.858
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.858
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.858
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.858
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.858
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.858
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.858
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.858
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.858
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.858
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.858
HNRNPA1 Homo sapiens ENSG00000135486 D 0.858
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.858
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.858
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.858
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.858
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.858
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.858
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.851
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.851
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.851
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.851
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.851
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.851
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.851
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.851
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.851
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.851
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.851
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.844
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.844
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.844
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.844
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.844
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.844
LOC785445 Bos taurus ENSBTAG00000025621 I 0.843
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.837
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.837
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.837
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.836
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.836
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.836
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.830
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.830
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.830
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.830
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.829
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.829
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.825
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.823
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.823
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.823
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.823
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.823
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.823
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.821
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.821
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.821
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.817
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.816
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.816
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.816
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.816
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.816
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.814
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.814
AAH45260 Xenopus laevis AAH45260 I 0.809
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.809
AAH72090 Xenopus laevis AAH72090 I 0.809
CBF67672 Xenopus laevis CBF67672 I 0.809
CBU92546 Xenopus laevis CBU92546 I 0.809
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.807
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.807
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.807
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.807
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.807
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.807
AAA49742 Xenopus laevis AAA49742 I 0.801
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.801
P17130 Xenopus laevis P17130 I 0.801
CBF67555 Xenopus laevis CBF67555 I 0.801
AAA49741 Xenopus laevis AAA49741 I 0.801
CBU92428 Xenopus laevis CBU92428 I 0.801
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.801
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.800
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.800
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.800
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.800
LOC100054206 Equus caballus ENSECAG00000006699 I 0.796
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.796
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.796
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.796
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.793
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.793
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.793
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.793
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.789
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.787
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.786
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.786
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.786
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.786
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.783
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.783
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.782
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.775
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.773
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.773
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.773
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.771
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.771
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.769
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.768
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.768
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.764
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.764
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.761
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.761
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.761
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.761
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.757
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.754
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.754
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.753
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.752
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.752
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.752
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.752
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.750
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.746
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.745
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.745
LOC100066794 Equus caballus ENSECAG00000023237 I 0.745
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.743
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.743
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.743
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.739
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.739
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.739
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.739
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.739
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.739
LOC781499 Bos taurus ENSBTAG00000021580 I 0.739
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.739
HNRNPA3 Homo sapiens ENSG00000170144 I 0.739
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.739
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.739
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.739
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.739
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.739
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.739
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.739
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.739
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.739
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.739
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.739
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.739
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.738
AAA49949 Xenopus laevis AAA49949 I 0.738
Gm8991 Mus musculus ENSMUSG00000059179 I 0.738
P51968 Xenopus laevis P51968 I 0.738
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.738
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.735
CBF67578 Xenopus laevis CBF67578 I 0.734
P51992 Xenopus laevis P51992 I 0.734
AAA49950 Xenopus laevis AAA49950 I 0.734
CBU92451 Xenopus laevis CBU92451 I 0.734
AAI69881 Xenopus laevis AAI69881 I 0.734
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.732
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.732
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.730
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.730
zgc:66127 Danio rerio ENSDARG00000011020 I 0.730
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.730
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.729
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.727
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.725
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.724
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.724
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.724
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.723
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.721
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.720
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.720
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.716
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.714
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.714
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.711
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.710
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.709
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.703
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.703
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.703
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.703
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.702
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.701