ENSCAFG00000002059 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000002059 T34987_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.908
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.908
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.908
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.887
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000031484 RRM 9 77
ENSCAFP00000031484 RRM 99 167

Links

Other RRM family RBPs
Other Canis familiaris RBPs

246 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.901
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.901
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.901
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.901
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.901
HNRNPA1 Homo sapiens ENSG00000135486 D 0.901
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.901
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.901
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.901
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.901
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.901
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.901
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.901
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.901
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.901
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.901
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.901
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.901
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.901
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.901
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.901
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.901
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.901
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.901
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.901
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.901
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.901
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.901
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.901
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.894
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.894
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.894
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.894
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.894
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.894
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.894
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.894
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.894
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.887
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.887
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.887
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.887
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.887
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.887
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.887
LOC785445 Bos taurus ENSBTAG00000025621 I 0.886
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.886
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.879
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.879
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.879
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.879
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.879
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.879
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.872
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.872
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.872
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.872
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.872
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.872
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.872
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.871
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.866
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.865
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.865
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.865
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.864
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.864
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.863
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.859
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.858
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.858
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.858
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.857
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.857
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.857
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.857
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.857
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.851
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.851
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.851
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.851
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.850
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.850
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.850
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.850
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.850
AAH45260 Xenopus laevis AAH45260 I 0.844
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.844
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.843
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.843
AAH72090 Xenopus laevis AAH72090 I 0.837
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.837
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.837
CBF67672 Xenopus laevis CBF67672 I 0.837
CBU92546 Xenopus laevis CBU92546 I 0.837
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.836
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.836
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.836
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.831
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.830
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.829
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.829
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.829
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.824
LOC100054206 Equus caballus ENSECAG00000006699 I 0.824
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.824
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.824
AAA49742 Xenopus laevis AAA49742 I 0.823
AAA49741 Xenopus laevis AAA49741 I 0.823
CBU92428 Xenopus laevis CBU92428 I 0.823
CBF67555 Xenopus laevis CBF67555 I 0.823
P17130 Xenopus laevis P17130 I 0.823
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.821
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.821
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.821
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.821
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.817
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.816
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.814
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.814
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.813
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.811
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.811
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.810
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.810
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.809
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.809
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.807
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.807
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.803
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.803
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.803
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.801
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.800
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.800
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.797
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.797
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.796
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.796
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.796
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.794
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.793
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.789
P51968 Xenopus laevis P51968 I 0.787
AAA49949 Xenopus laevis AAA49949 I 0.787
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.787
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.782
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.782
HNRNPA3 Homo sapiens ENSG00000170144 I 0.782
LOC781499 Bos taurus ENSBTAG00000021580 I 0.782
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.782
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.782
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.782
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.782
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.782
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.782
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.782
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.782
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.782
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.782
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.782
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.782
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.782
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.782
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.782
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.782
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.782
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.782
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.781
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.780
LOC100066794 Equus caballus ENSECAG00000023237 I 0.780
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.780
Gm8991 Mus musculus ENSMUSG00000059179 I 0.780
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.780
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.780
P51992 Xenopus laevis P51992 I 0.776
AAI69881 Xenopus laevis AAI69881 I 0.776
CBF67578 Xenopus laevis CBF67578 I 0.776
AAA49950 Xenopus laevis AAA49950 I 0.776
CBU92451 Xenopus laevis CBU92451 I 0.776
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.775
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.775
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.773
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.773
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.766
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.766
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.766
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.762
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.759
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.759
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.759
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.757
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.755
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.755
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.752
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.752
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.750
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.748
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.746
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.745
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.745
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.745
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.745
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.745
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.745
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.745
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.743
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.743
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.740
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.739
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.738
zgc:66127 Danio rerio ENSDARG00000011020 I 0.738
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.736
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.733
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.732
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.732
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.731
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.729
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.727
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.727
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.723
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.723
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.721
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.721
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.721
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.720
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.720
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.719
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.719
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.718
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.717
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.717
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.717
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.716
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.714
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.714
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.711
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.711
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.711
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.710
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.709
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.709
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.705
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.704
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.702
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.702