zgc:66127 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000011020 T36061_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.829
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.829
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.829
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.807
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000024594 RRM 17 86
ENSDARP00000024594 RRM 108 177

Links

Other RRM family RBPs
Other Danio rerio RBPs

201 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.843
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.836
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.836
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.836
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.830
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.829
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.829
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.829
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.829
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.829
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.829
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.829
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.829
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.829
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.829
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.829
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.829
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.829
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.829
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.829
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.829
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.829
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.829
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.829
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.829
HNRNPA1 Homo sapiens ENSG00000135486 D 0.829
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.829
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.829
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.829
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.829
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.829
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.829
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.829
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.821
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.821
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.821
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.821
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.821
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.821
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.821
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.821
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.821
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.821
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.821
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.821
AAH45260 Xenopus laevis AAH45260 I 0.814
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.814
AAH72090 Xenopus laevis AAH72090 I 0.814
CBU92546 Xenopus laevis CBU92546 I 0.814
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.814
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.814
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.814
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.814
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.814
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.814
CBF67672 Xenopus laevis CBF67672 I 0.814
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.807
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.807
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.807
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.807
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.807
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.807
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.807
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.807
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.807
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.800
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.800
P17130 Xenopus laevis P17130 I 0.800
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.800
AAA49742 Xenopus laevis AAA49742 I 0.800
AAA49741 Xenopus laevis AAA49741 I 0.800
CBF67555 Xenopus laevis CBF67555 I 0.800
CBU92428 Xenopus laevis CBU92428 I 0.800
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.800
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.793
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.793
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.787
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.786
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.786
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.786
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.786
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.782
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.780
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.780
LOC785445 Bos taurus ENSBTAG00000025621 I 0.780
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.779
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.779
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.779
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.779
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.779
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.779
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.779
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.773
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.773
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.771
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.771
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.771
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.768
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.766
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.766
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.766
HNRNPA3 Homo sapiens ENSG00000170144 I 0.766
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.766
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.766
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.766
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.766
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.766
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.766
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.766
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.766
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.766
LOC781499 Bos taurus ENSBTAG00000021580 I 0.766
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.766
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.766
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.766
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.766
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.766
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.766
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.766
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.766
P51968 Xenopus laevis P51968 I 0.764
AAA49949 Xenopus laevis AAA49949 I 0.764
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.764
LOC100066794 Equus caballus ENSECAG00000023237 I 0.764
Gm8991 Mus musculus ENSMUSG00000059179 I 0.764
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.764
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.759
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.759
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.759
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.759
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.759
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.759
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.759
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.754
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.754
LOC100054206 Equus caballus ENSECAG00000006699 I 0.754
P51992 Xenopus laevis P51992 I 0.754
CBF67578 Xenopus laevis CBF67578 I 0.754
AAA49950 Xenopus laevis AAA49950 I 0.754
AAI69881 Xenopus laevis AAI69881 I 0.754
CBU92451 Xenopus laevis CBU92451 I 0.754
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.752
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.752
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.752
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.750
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.750
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.750
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.746
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.745
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.745
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.745
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.745
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.743
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.741
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.739
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.739
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.738
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.738
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.738
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.738
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.736
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.736
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.736
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.736
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.732
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.732
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.732
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.730
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.730
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.730
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.730
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.730
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.727
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.725
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.725
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.725
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.723
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.723
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.723
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.723
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.718
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.718
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.718
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.718
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.716
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.714
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.714
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.713
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.711
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.711
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.711
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.709
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.707
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.707
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.707
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.706
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.704
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.702
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.702
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.702
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.700