ENSCJAG00000017130 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000017130 T35642_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.872
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.872
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.872
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.858
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000031480 RRM 5 74
ENSCJAP00000031480 RRM 96 165

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

225 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.879
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.872
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.872
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.872
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.872
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.872
HNRNPA1 Homo sapiens ENSG00000135486 D 0.872
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.872
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.872
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.872
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.872
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.872
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.872
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.872
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.872
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.872
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.872
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.872
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.872
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.872
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.872
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.872
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.872
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.872
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.872
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.872
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.872
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.872
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.865
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.865
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.865
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.865
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.865
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.865
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.865
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.865
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.865
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.864
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.858
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.858
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.858
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.858
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.858
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.858
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.858
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.858
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.858
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.858
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.858
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.858
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.858
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.858
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.858
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.857
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.857
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.851
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.851
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.851
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.850
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.844
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.844
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.844
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.844
LOC785445 Bos taurus ENSBTAG00000025621 I 0.843
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.837
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.837
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.837
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.836
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.836
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.836
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.831
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.831
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.830
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.830
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.829
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.823
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.823
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.823
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.821
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.821
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.821
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.821
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.816
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.816
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.816
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.814
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.814
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.814
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.814
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.814
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.814
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.814
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.810
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.807
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.807
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.807
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.804
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.803
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.803
LOC100054206 Equus caballus ENSECAG00000006699 I 0.803
AAH72090 Xenopus laevis AAH72090 I 0.801
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.801
CBF67672 Xenopus laevis CBF67672 I 0.801
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.801
CBU92546 Xenopus laevis CBU92546 I 0.801
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.800
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.800
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.800
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.797
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.796
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.796
AAH45260 Xenopus laevis AAH45260 I 0.794
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.793
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.793
AAA49741 Xenopus laevis AAA49741 I 0.787
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.787
P17130 Xenopus laevis P17130 I 0.787
CBU92428 Xenopus laevis CBU92428 I 0.787
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.787
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.787
AAA49742 Xenopus laevis AAA49742 I 0.787
CBF67555 Xenopus laevis CBF67555 I 0.787
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.786
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.786
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.786
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.783
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.782
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.782
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.779
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.779
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.776
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.775
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.775
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.775
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.775
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.775
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.775
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.773
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.773
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.768
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.768
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.768
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.768
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.768
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.768
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.768
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.768
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.768
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.768
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.768
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.768
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.768
LOC781499 Bos taurus ENSBTAG00000021580 I 0.768
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.768
HNRNPA3 Homo sapiens ENSG00000170144 I 0.768
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.768
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.768
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.768
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.768
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.768
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.768
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.766
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.766
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.766
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.766
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.766
LOC100066794 Equus caballus ENSECAG00000023237 I 0.766
Gm8991 Mus musculus ENSMUSG00000059179 I 0.766
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.764
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.761
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.761
AAA49949 Xenopus laevis AAA49949 I 0.759
P51968 Xenopus laevis P51968 I 0.759
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.759
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.754
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.753
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.752
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.750
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.750
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.748
CBF67578 Xenopus laevis CBF67578 I 0.748
CBU92451 Xenopus laevis CBU92451 I 0.748
AAA49950 Xenopus laevis AAA49950 I 0.748
P51992 Xenopus laevis P51992 I 0.748
AAI69881 Xenopus laevis AAI69881 I 0.748
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.745
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.741
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.740
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.736
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.736
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.731
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.731
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.730
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.730
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.726
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.725
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.725
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.723
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.722
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.721
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.718
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.718
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.715
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.713
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.713
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.711
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.711
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.710
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.710
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.710
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.709
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.709
zgc:66127 Danio rerio ENSDARG00000011020 I 0.709
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.708
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.707
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.704
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.704
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.704
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.703
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.703
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.703
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.702
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.702
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.702
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.701