hnrnpa1 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000036675 T36131_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.850
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.850
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.850
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.829
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000053266 RRM 33 102
ENSDARP00000053266 RRM 124 193

Links

Other RRM family RBPs
Other Danio rerio RBPs

221 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.864
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.857
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.857
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.857
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.850
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.850
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.850
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.850
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.850
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.850
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.850
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.850
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.850
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.850
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.850
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.850
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.850
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.850
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.850
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.850
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.850
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.850
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.850
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.850
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.850
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.850
HNRNPA1 Homo sapiens ENSG00000135486 D 0.850
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.850
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.850
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.850
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.844
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.843
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.843
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.843
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.843
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.843
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.843
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.843
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.836
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.836
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.836
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.836
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.836
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.836
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.836
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.836
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.836
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.836
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.829
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.829
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.829
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.829
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.829
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.829
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.829
AAH72090 Xenopus laevis AAH72090 I 0.829
CBU92546 Xenopus laevis CBU92546 I 0.829
CBF67672 Xenopus laevis CBF67672 I 0.829
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.829
AAH45260 Xenopus laevis AAH45260 I 0.829
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.829
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.821
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.821
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.821
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.821
zgc:66127 Danio rerio ENSDARG00000011020 I 0.821
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.821
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.821
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.814
CBF67555 Xenopus laevis CBF67555 I 0.814
CBU92428 Xenopus laevis CBU92428 I 0.814
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.814
P17130 Xenopus laevis P17130 I 0.814
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.814
AAA49742 Xenopus laevis AAA49742 I 0.814
AAA49741 Xenopus laevis AAA49741 I 0.814
LOC785445 Bos taurus ENSBTAG00000025621 I 0.809
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.807
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.807
AAA49949 Xenopus laevis AAA49949 I 0.807
P51968 Xenopus laevis P51968 I 0.807
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.807
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.807
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.807
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.801
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.800
Gm8991 Mus musculus ENSMUSG00000059179 I 0.800
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.800
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.800
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.800
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.796
CBU92451 Xenopus laevis CBU92451 I 0.796
P51992 Xenopus laevis P51992 I 0.796
AAI69881 Xenopus laevis AAI69881 I 0.796
AAA49950 Xenopus laevis AAA49950 I 0.796
CBF67578 Xenopus laevis CBF67578 I 0.796
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.794
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.794
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.794
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.794
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.794
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.794
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.794
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.794
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.794
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.794
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.794
HNRNPA3 Homo sapiens ENSG00000170144 I 0.794
LOC781499 Bos taurus ENSBTAG00000021580 I 0.794
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.794
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.794
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.794
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.794
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.794
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.794
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.794
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.794
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.793
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.793
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.793
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.793
LOC100066794 Equus caballus ENSECAG00000023237 I 0.793
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.793
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.787
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.787
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.787
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.787
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.787
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.786
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.782
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.782
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.780
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.780
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.780
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.780
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.779
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.779
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.775
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.775
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.773
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.773
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.773
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.773
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.773
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.769
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.768
LOC100054206 Equus caballus ENSECAG00000006699 I 0.768
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.766
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.766
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.766
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.766
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.759
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.759
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.759
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.759
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.759
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.757
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.757
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.757
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.755
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.754
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.754
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.754
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.752
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.752
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.752
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.752
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.750
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.750
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.748
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.746
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.746
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.746
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.746
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.745
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.745
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.745
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.743
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.739
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.739
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.739
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.739
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.738
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.736
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.736
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.736
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.736
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.734
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.732
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.732
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.732
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.730
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.730
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.730
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.730
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.730
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.729
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.729
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.729
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.728
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.726
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.725
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.725
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.725
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.723
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.723
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.723
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.723
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.720
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.717
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.716
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.714
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.714
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.713
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.711
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.711
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.710
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.709
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.703
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.703
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.701