XP_848548.1 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000016313 T35139_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.879
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.879
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.879
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.858
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.745
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000024032 RRM 10 79
ENSCAFP00000024032 RRM 101 170

Links

Other RRM family RBPs
Other Canis familiaris RBPs

242 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.929
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.887
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.887
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.887
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.879
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.879
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.879
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.879
HNRNPA1 Homo sapiens ENSG00000135486 D 0.879
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.879
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.879
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.879
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.879
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.879
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.879
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.879
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.879
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.879
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.879
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.879
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.879
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.879
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.879
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.879
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.879
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.879
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.879
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.879
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.879
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.879
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.879
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.879
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.879
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.879
LOC785445 Bos taurus ENSBTAG00000025621 I 0.879
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.872
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.872
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.872
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.872
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.872
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.872
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.865
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.865
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.865
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.865
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.865
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.864
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.864
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.858
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.858
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.858
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.858
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.858
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.858
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.858
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.858
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.858
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.858
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.852
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.851
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.851
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.851
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.851
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.851
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.851
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.851
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.851
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.850
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.850
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.843
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.843
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.838
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.837
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.837
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.836
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.836
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.836
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.836
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.836
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.836
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.836
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.830
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.830
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.830
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.830
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.829
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.829
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.829
LOC100054206 Equus caballus ENSECAG00000006699 I 0.824
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.824
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.823
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.823
AAH45260 Xenopus laevis AAH45260 I 0.823
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.821
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.818
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.817
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.817
CBF67672 Xenopus laevis CBF67672 I 0.816
AAH72090 Xenopus laevis AAH72090 I 0.816
CBU92546 Xenopus laevis CBU92546 I 0.816
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.814
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.814
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.814
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.814
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.814
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.814
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.810
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.810
CBF67555 Xenopus laevis CBF67555 I 0.809
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.809
AAA49741 Xenopus laevis AAA49741 I 0.809
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.809
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.809
AAA49742 Xenopus laevis AAA49742 I 0.809
P17130 Xenopus laevis P17130 I 0.809
CBU92428 Xenopus laevis CBU92428 I 0.809
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.807
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.803
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.803
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.800
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.800
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.797
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.796
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.793
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.793
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.790
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.789
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.789
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.787
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.786
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.786
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.786
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.783
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.782
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.782
AAA49949 Xenopus laevis AAA49949 I 0.780
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.780
P51968 Xenopus laevis P51968 I 0.780
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.779
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.775
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.775
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.773
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.773
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.771
AAA49950 Xenopus laevis AAA49950 I 0.769
CBF67578 Xenopus laevis CBF67578 I 0.769
CBU92451 Xenopus laevis CBU92451 I 0.769
AAI69881 Xenopus laevis AAI69881 I 0.769
P51992 Xenopus laevis P51992 I 0.769
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.768
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.768
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.768
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.768
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.768
LOC781499 Bos taurus ENSBTAG00000021580 I 0.768
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.768
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.768
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.768
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.768
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.768
HNRNPA3 Homo sapiens ENSG00000170144 I 0.768
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.768
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.768
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.768
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.768
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.768
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.768
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.768
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.768
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.768
LOC100066794 Equus caballus ENSECAG00000023237 I 0.766
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.766
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.766
Gm8991 Mus musculus ENSMUSG00000059179 I 0.766
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.766
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.766
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.764
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.764
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.761
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.761
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.761
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.760
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.759
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.754
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.752
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.752
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.752
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.752
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.748
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.748
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.748
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.748
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.746
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.745
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.745
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.743
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.739
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.738
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.738
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.736
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.733
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.733
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.731
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.729
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.725
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.724
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.723
zgc:66127 Danio rerio ENSDARG00000011020 I 0.723
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.723
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.720
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.719
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.718
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.718
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.718
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.717
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.716
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.716
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.715
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.714
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.713
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.712
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.711
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.711
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.710
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.710
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.709
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.709
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.709
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.709
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.707
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.707
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.707
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.706
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.705
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.704
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.704
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.704
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.703
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.703
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.703
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.702
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.702