amel4_ncbi_hmm5219 (Apis mellifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 amel4_ncbi_hmm5219 T31924_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.875
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.778
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.778
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.778
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.769
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.769
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.769
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.725
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.725
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.725
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.725
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.725
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
amel4_ncbi_hmm5219 RRM 29 99
amel4_ncbi_hmm5219 RRM 115 183
amel4_ncbi_hmm5219 RRM 262 332

Links

Other RRM family RBPs
Other Apis mellifera RBPs

179 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185541 Helobdella robusta 185541 I 0.744
187316 Helobdella robusta 187316 N 0.749
AAA96942 Xenopus laevis AAA96942 I 0.725
AAA96943 Xenopus laevis AAA96943 I 0.765
AAA96944 Xenopus laevis AAA96944 I 0.751
AAA96945 Xenopus laevis AAA96945 I 0.778
AAEL008164 Aedes aegypti AAEL008164 N 0.718
AAH86269 Xenopus laevis AAH86269 I 0.720
AAH94189 Xenopus laevis AAH94189 I 0.769
AAH99348 Xenopus laevis AAH99348 I 0.778
AAI69769 Xenopus laevis AAI69769 I 0.751
AAI70539 Xenopus laevis AAI70539 I 0.769
AGAP000965 Anopheles gambiae AGAP000965 I 0.915
AGAP001883 Anopheles gambiae AGAP001883 N 0.732
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.769
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.759
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.778
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.725
Bm1_43995 Brugia malayi Bm1_43995 N 0.710
CAA59430 Xenopus laevis CAA59430 I 0.761
CBF67567 Xenopus laevis CBF67567 I 0.778
CBU92440 Xenopus laevis CBU92440 I 0.778
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.875
CPIJ008385 Culex quinquefasciatus CPIJ008385 N 0.714
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.910
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.875
CpipJ_CPIJ008385 Culex pipiens CpipJ_CPIJ008385 N 0.714
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.910
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.778
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.746
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.769
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.730
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.759
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.778
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.769
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.778
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.759
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.725
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.778
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.769
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.778
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.778
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.769
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.755
elavl3 Danio rerio ENSDARG00000014420 I 0.764
hug Danio rerio ENSDARG00000016405 I 0.717
elavl1 Danio rerio ENSDARG00000038695 I 0.708
elavl2 Danio rerio ENSDARG00000040732 I 0.783
elavl4 Danio rerio ENSDARG00000045639 I 0.776
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.778
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.711
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.755
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.716
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.769
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.778
LOC100060819 Equus caballus ENSECAG00000019459 I 0.720
ELAVL2 Equus caballus ENSECAG00000020142 I 0.769
LOC100051268 Equus caballus ENSECAG00000022284 I 0.778
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.778
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.769
ELAVL1 Felis catus ENSFCAG00000014947 I 0.725
ELAVL1 Homo sapiens ENSG00000066044 D 0.725
ELAVL2 Homo sapiens ENSG00000107105 D 0.769
ELAVL4 Homo sapiens ENSG00000162374 D 0.778
ELAVL3 Homo sapiens ENSG00000196361 I 0.759
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.707
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.778
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.764
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.774
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.725
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.778
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.769
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.778
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.769
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.725
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.759
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.778
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.725
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.759
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.769
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.778
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.751
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.725
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.775
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.778
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.725
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.778
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.730
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.764
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.725
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.769
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.778
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.778
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.769
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.725
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.726
Elavl3 Mus musculus ENSMUSG00000003410 I 0.759
Elavl2 Mus musculus ENSMUSG00000008489 I 0.769
Elavl4 Mus musculus ENSMUSG00000028546 I 0.778
Elavl1 Mus musculus ENSMUSG00000040028 I 0.716
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.769
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.725
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.778
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.759
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.725
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.778
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.725
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.769
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.778
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.703
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.778
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.757
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.714
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.778
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.778
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.712
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.778
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.725
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.769
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.778
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.725
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.736
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.769
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.769
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.722
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.759
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.716
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.769
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.759
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.778
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.769
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.778
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.769
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.720
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.759
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.716
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.725
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.745
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.778
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.774
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.783
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.753
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.783
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.777
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.764
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.778
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.725
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.736
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.759
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.769
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.769
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.778
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.778
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.725
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.748
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.821
Rbp9 Drosophila melanogaster FBgn0010263 D 0.896
GF14992 Drosophila ananassae FBgn0092017 I 0.880
GG12756 Drosophila erecta FBgn0105043 N 0.735
GG24901 Drosophila erecta FBgn0117030 I 0.880
GH13638 Drosophila grimshawi FBgn0121114 I 0.896
GI11879 Drosophila mojavensis FBgn0134637 I 0.880
GL26299 Drosophila persimilis FBgn0163881 I 0.900
GM18380 Drosophila sechellia FBgn0173287 I 0.880
GM19036 Drosophila sechellia FBgn0173939 N 0.735
GD16475 Drosophila simulans FBgn0188089 N 0.735
GJ13991 Drosophila virilis FBgn0201209 I 0.880
GK14865 Drosophila willistoni FBgn0216870 I 0.880
GE18193 Drosophila yakuba FBgn0235624 I 0.880
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.880
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.840
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.844
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.835
ISCW010302 Ixodes scapularis ISCW010302 N 0.744
LOAG_11702 Loa loa LOAG_11702 N 0.720
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.981
Q5U259 Xenopus laevis Q5U259 I 0.720
Q91584 Xenopus laevis Q91584 I 0.751
Q91903 Xenopus laevis Q91903 I 0.765