CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSACAG00000005544
(
Anolis carolinensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSACAG00000005544
T34639_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.752
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.752
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSACAP00000005406
RRM
6
68
VFVGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFEDHRDADDAVYELNGKELCNERVT
ENSACAP00000005406
RRM
109
174
LIVENLSSRVSWQDLKDFMRKAGEVTFVDAHRNNPNEGVVEFASSSDMKSAMDKLDGSELNGRRIK
Links
Other
RRM
family RBPs
Other
Anolis carolinensis
RBPs
133 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM39
Anolis carolinensis
ENSACAG00000006436
N
0.000
rbm39a
Danio rerio
ENSDARG00000011613
N
0.000
RBM39
Gallus gallus
ENSGALG00000001550
N
0.000
RBM23
Oryzias latipes
ENSORLG00000009919
N
0.000
RBM23
Oryzias latipes
ENSORLG00000010370
N
0.000
RBM39
Taeniopygia guttata
ENSTGUG00000003048
N
0.000
RBM23
Tetraodon nigroviridis
ENSTNIG00000017904
N
0.000
RBM23
Takifugu rubripes
ENSTRUG00000011352
N
0.000
estExt_Genewise1.C_sca_90322
Lottia gigantea
estExt_Genewise1.C_sca_90322
N
0.000