CPEB3 (Tursiops truncatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTTRG00000012334 T42638_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.823
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.817
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.771
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000011703 RRM 443 508
ENSTTRP00000011703 RRM 548 617

Links

Other RRM family RBPs
Other Tursiops truncatus RBPs

143 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
111676 Helobdella robusta 111676 I 0.725
ADH10187 Xenopus laevis ADH10187 I 0.801
AGAP002296 Anopheles gambiae AGAP002296 I 0.732
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.752
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.830
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.816
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.801
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.746
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.771
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.830
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.809
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.801
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.801
CPEB3 Bos taurus ENSBTAG00000015450 I 0.830
CPEB2 Bos taurus ENSBTAG00000019847 I 0.816
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.830
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.816
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.796
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.830
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.816
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.764
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.830
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.816
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.801
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.816
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.801
CPEB2 Danio rerio ENSDARG00000052604 I 0.709
cpeb3 Danio rerio ENSDARG00000060103 I 0.809
CPEB4 Danio rerio ENSDARG00000060495 I 0.794
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.816
CPEB3 Equus caballus ENSECAG00000000077 I 0.830
CPEB2 Equus caballus ENSECAG00000008722 I 0.816
LOC100058918 Equus caballus ENSECAG00000016921 I 0.801
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.801
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.823
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.704
CPEB3 Homo sapiens ENSG00000107864 I 0.830
CPEB4 Homo sapiens ENSG00000113742 D 0.801
CPEB2 Homo sapiens ENSG00000137449 D 0.816
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.789
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.787
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.787
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.794
CPEB3 Gallus gallus ENSGALG00000006912 I 0.830
CPEB4 Gallus gallus ENSGALG00000014074 I 0.790
CPEB2 Gallus gallus ENSGALG00000014516 I 0.816
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.816
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.801
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.830
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.816
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.801
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.830
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.816
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.823
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.790
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.816
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.830
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.830
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.801
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.816
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.830
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.794
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.816
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.801
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.830
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.801
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.830
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.816
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.809
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.790
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.830
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.816
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.801
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.830
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.801
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.816
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.801
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.801
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.794
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.787
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.782
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.801
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.738
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.830
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.816
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.801
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.830
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.816
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.801
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.816
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.786
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.801
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.788
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.830
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.801
CPEB3 Sorex araneus ENSSARG00000001994 I 0.830
CPEB2 Sorex araneus ENSSARG00000010559 I 0.730
CPEB4 Sorex araneus ENSSARG00000013389 I 0.787
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.816
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.830
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.796
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.801
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.830
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.801
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.830
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.816
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.796
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.787
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.782
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.794
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.787
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.796
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.775
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.801
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.816
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.730
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.729
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.830
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.761
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.723
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.738
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.757
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.752
GF10140 Drosophila ananassae FBgn0087181 I 0.759
GG15051 Drosophila erecta FBgn0107305 I 0.752
GH16131 Drosophila grimshawi FBgn0123602 I 0.757
GI12400 Drosophila mojavensis FBgn0135157 I 0.752
GL20808 Drosophila persimilis FBgn0158403 I 0.752
GJ12289 Drosophila virilis FBgn0199538 I 0.752
GK17460 Drosophila willistoni FBgn0219459 I 0.752
GE21274 Drosophila yakuba FBgn0238542 I 0.752
orb2 Drosophila melanogaster FBgn0262573 D 0.752
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.789
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.732
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.789
ISCW010113 Ixodes scapularis ISCW010113 I 0.768
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.771
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.757
PHUM335520 Pediculus humanus PHUM335520 I 0.750
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.710
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.768
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.746
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.768