SB01G045570 (Sorghum bicolor)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Sb01g045570 T45905_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.769
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Sb01g045570.1 RRM 17 87
Sb01g045570.1 RRM 110 181
Sb01g045570.1 RRM 228 292

Links

Other RRM family RBPs
Other Sorghum bicolor RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006434 Ricinus communis 30169.m006434 I 0.846
AT5G19350 Arabidopsis thaliana AT5G19350-TAIR-G N 0.774
BGIOSIBCE009857 Oryza indica BGIOSIBCE009857 N 0.731
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.923
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.707
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.827
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.702
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.707
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.707
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.707
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.707
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.707
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.702
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.827
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.764
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.745
XM_002871835.1 Arabidopsis lyrata fgenesh2_kg.6__1954__AT5G19350.2 N 0.779
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.712
Glyma11g14150.1 Glycine max Glyma11g14150.1 N 0.736
Glyma12g06120.1 Glycine max Glyma12g06120.1 N 0.726
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.721
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.779
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.716
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.712
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.990
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.827
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.707
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.769
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.769
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.923
MDP0000123012 Malus x domestica MDP0000123012 N 0.716
MDP0000123414 Malus x domestica MDP0000123414 N 0.707
MDP0000276227 Malus x domestica MDP0000276227 I 0.808
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.769
mgf023806m Mimulus guttatus mgf023806m I 0.760
PK28027.1 Cannabis sativa PK28027.1 I 0.808
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.822
ppa005940m Prunus persica ppa005940m I 0.803