GRMZM2G036837 (Zea mays)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 GRMZM2G036837 T05702_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G036837_P01 CCCH ZF 62 88
GRMZM2G036837_P01 CCCH ZF 111 137
GRMZM2G036837_P01 CCCH ZF 156 182
GRMZM2G036837_P01 CCCH ZF 308 334
GRMZM2G036837_P01 CCCH ZF 354 380
GRMZM2G036837_P02 CCCH ZF 62 88
GRMZM2G036837_P02 CCCH ZF 111 137
GRMZM2G036837_P02 CCCH ZF 156 182
GRMZM2G036837_P02 CCCH ZF 308 334
GRMZM2G036837_P02 CCCH ZF 354 380
GRMZM2G036837_P03 CCCH ZF 62 88
GRMZM2G036837_P03 CCCH ZF 111 137
GRMZM2G036837_P03 CCCH ZF 156 182
GRMZM2G036837_P03 CCCH ZF 308 334
GRMZM2G036837_P03 CCCH ZF 354 380
GRMZM2G036837_P04 CCCH ZF 62 88

Links

Other CCCH ZF family RBPs
Other Zea mays RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK29685.1 Cannabis sativa PK29685.1 N 0.704
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.704
mgf002685m Mimulus guttatus mgf002685m N 0.733
mgf008934m Mimulus guttatus mgf008934m N 0.741
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.785
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.963
GRMZM2G475017 Zea mays GRMZM2G475017 N 0.926
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.726
LjSGA_017774.1 Lotus japonicus LjSGA_017774.1 N 0.815
LjSGA_036568.1 Lotus japonicus LjSGA_036568.1 N 0.815
LjSGA_091950.1 Lotus japonicus LjSGA_091950.1 N 0.704
LjSGA_124984.1 Lotus japonicus LjSGA_124984.1 N 0.704
LjSGA_129379.1 Lotus japonicus LjSGA_129379.1 N 0.815
MDP0000319251 Malus x domestica MDP0000319251 N 0.748
MDP0000535412 Malus x domestica MDP0000535412 N 0.726
PDK_20s1508231g002 Phoenix dactylifera PDK_20s1508231g002 N 0.741
ppa005056m Prunus persica ppa005056m N 0.756
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.726
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.711
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.711
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.704
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.741
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.926
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.733
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.741
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.778
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.911
SB03G009920 Sorghum bicolor Sb03g009920 N 0.785
SB03G009930 Sorghum bicolor Sb03g009930 N 0.970
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.711
29647.m002009 Ricinus communis 29647.m002009 N 0.704
29726.m004014 Ricinus communis 29726.m004014 N 0.748
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.726
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.704
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.726
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.719
ppa005229m Prunus persica ppa005229m N 0.704