ENSORLG00000014385 (Oryzias latipes)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSORLG00000014385 T19295_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.851
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.798
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.798
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.782
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.782
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000018031 KH 12 72
ENSORLP00000018031 KH 96 159
ENSORLP00000018031 KH 258 320
ENSORLP00000018032 KH 12 72
ENSORLP00000018032 KH 96 159
ENSORLP00000018032 KH 248 310

Links

Other KH family RBPs
Other Oryzias latipes RBPs

118 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
pcbp2 Danio rerio ENSDARG00000013184 D 0.798
PCBP2 Homo sapiens ENSG00000197111 D 0.798
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.782
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.851
PCBP1 Homo sapiens ENSG00000169564 D 0.782
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.787
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.798
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.798
PCBP4 Monodelphis domestica ENSMODG00000011790 I 0.700
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.782
ENSPPYG00000013822 Pongo pygmaeus ENSPPYG00000013822 I 0.737
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.798
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.782
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.851
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.803
PCBP4 Oryzias latipes ENSORLG00000003061 I 0.725
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.750
Pcbp4 Mus musculus ENSMUSG00000023495 I 0.737
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.798
PCBP4 Ornithorhynchus anatinus ENSOANG00000014110 I 0.742
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.851
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.782
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.798
PCBP4 Oryctolagus cuniculus ENSOCUG00000025336 I 0.737
PCBP3 Otolemur garnettii ENSOGAG00000008044 I 0.755
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.801
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.798
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.799
PCBP4 Pan troglodytes ENSPTRG00000014983 I 0.737
PCBP3 Pteropus vampyrus ENSPVAG00000000832 I 0.718
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.798
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.755
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.851
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.798
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.803
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.762
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.762
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.782
Ame_R007160 Ailuropoda melanoleuca Ame_R007160 I 0.766
Ame_R011627 Ailuropoda melanoleuca Ame_R011627 I 0.707
AAH41241 Xenopus laevis AAH41241 I 0.803
AAH84195 Xenopus laevis AAH84195 I 0.803
CAB50743 Xenopus laevis CAB50743 I 0.803
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.900
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.835
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.782
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.851
Pcbp4 Rattus norvegicus ENSRNOG00000012406 I 0.737
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.782
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.798
PCBP4 Taeniopygia guttata ENSTGUG00000006393 I 0.732
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.872
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.835
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.787
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.757
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.840
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.762
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.793
CAD29864 Xenopus laevis CAD29864 I 0.803
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.798
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.798
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.787
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.771
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.793
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.798
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.851
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.782
PCBP4 Cavia porcellus ENSCPOG00000014617 I 0.732
pcbp3 Danio rerio ENSDARG00000054378 I 0.755
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.798
LOC100050579 Equus caballus ENSECAG00000002544 I 0.782
LOC100050101 Equus caballus ENSECAG00000012413 I 0.851
PCBP2 Equus caballus ENSECAG00000022389 I 0.798
LOC100409398 Callithrix jacchus ENSCJAG00000007694 I 0.734
A6MK33_CALJA Callithrix jacchus ENSCJAG00000005783 I 0.737
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.851
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.878
PCBP4 Anolis carolinensis ENSACAG00000011701 I 0.763
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.782
PCBP4_BOVIN Bos taurus ENSBTAG00000018622 I 0.737
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.798
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.840
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.798
PCBP4 Canis familiaris ENSCAFG00000010019 I 0.737
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.761
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.851
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.755
LOC100060660 Equus caballus ENSECAG00000024218 I 0.737
PCBP2 Echinops telfairi ENSETEG00000014741 I 0.716
PCBP3 Felis catus ENSFCAG00000014812 I 0.729
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.798
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.777
PCBP2 Macropus eugenii ENSMEUG00000001887 I 0.723
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.814
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.851
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.840
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.798
PCBP3 Microcebus murinus ENSMICG00000012679 I 0.761
PCBP3 Myotis lucifugus ENSMLUG00000003074 I 0.729
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.782
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.851
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.798
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.782
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.798
PCBP4 Homo sapiens ENSG00000090097 I 0.737
PCBP3 Homo sapiens ENSG00000183570 I 0.851
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.840
PCBP4 Gasterosteus aculeatus ENSGACG00000002664 I 0.767
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.932
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.777
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.793
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.830
PCBP3 Gallus gallus ENSGALG00000004394 I 0.809
PCBP3 Gallus gallus ENSGALG00000013155 I 0.878
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.851
PCBP4 Gorilla gorilla ENSGGOG00000012474 I 0.737
PCBP4 Macaca mulatta ENSMMUG00000022205 I 0.737