ENSCAFG00000011035 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000011035 T35093_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.957
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.957
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.957
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.943
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.779
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000016258 RRM 16 84
ENSCAFP00000016258 RRM 106 174

Links

Other RRM family RBPs
Other Canis familiaris RBPs

319 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPA1 Homo sapiens ENSG00000135486 D 0.923
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.908
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.797
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.923
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.887
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.711
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.866
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.915
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.755
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.755
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.732
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.923
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.923
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.741
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.838
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.000
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.866
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.750
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.797
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.797
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.923
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.923
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.743
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.817
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.908
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.790
Gm8991 Mus musculus ENSMUSG00000059179 I 0.796
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.797
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.923
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.901
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.797
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.852
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.901
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.923
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.887
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.915
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.901
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.908
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.923
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.908
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.894
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.873
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.915
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.908
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.915
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.873
P51992 Xenopus laevis P51992 I 0.785
AAA49950 Xenopus laevis AAA49950 I 0.785
AAA49949 Xenopus laevis AAA49949 I 0.796
AAA49742 Xenopus laevis AAA49742 I 0.831
AAA49741 Xenopus laevis AAA49741 I 0.831
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.721
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.923
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.852
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.803
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.797
AAH45260 Xenopus laevis AAH45260 I 0.845
AAH72090 Xenopus laevis AAH72090 I 0.845
P51968 Xenopus laevis P51968 I 0.796
P17130 Xenopus laevis P17130 I 0.831
CBU92546 Xenopus laevis CBU92546 I 0.845
CBU92451 Xenopus laevis CBU92451 I 0.785
CBU92428 Xenopus laevis CBU92428 I 0.831
CBF67672 Xenopus laevis CBF67672 I 0.845
CBF67578 Xenopus laevis CBF67578 I 0.785
CBF67555 Xenopus laevis CBF67555 I 0.831
AAI69881 Xenopus laevis AAI69881 I 0.785
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.923
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.722
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.796
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.746
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.887
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.789
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.923
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.880
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.775
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.732
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.887
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.734
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.838
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.923
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.725
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.782
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.796
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.880
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.852
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.923
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.831
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.734
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.797
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.797
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.923
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.923
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.908
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.762
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.838
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.732
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.866
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.915
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.901
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.907
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.845
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.866
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.873
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.859
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.901
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.894
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.797
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.831
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.923
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.923
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.852
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.866
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.824
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.894
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.858
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.824
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.894
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.886
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.831
LOC785445 Bos taurus ENSBTAG00000025621 I 0.873
LOC781499 Bos taurus ENSBTAG00000021580 I 0.797
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.923
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.803
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.859
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.923
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.901
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.879
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.815
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.914
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.797
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.908
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.887
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.845
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.908
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.866
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.901
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.873
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.915
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.739
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.894
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.732
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.908
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.739
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.797
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.923
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.797
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.881
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.915
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.845
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.797
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.797
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.908
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.907
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.923
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.715
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.796
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.796
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.831
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.725
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.838
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.797
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.923
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.746
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.782
zgc:66127 Danio rerio ENSDARG00000011020 I 0.754
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.894
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.797
LOC100054206 Equus caballus ENSECAG00000006699 I 0.900
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.923
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.757
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.923
HNRNPA3 Homo sapiens ENSG00000170144 I 0.797
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.796
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.923
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.845
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.908
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.873
LOC100066794 Equus caballus ENSECAG00000023237 I 0.796
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.797