Q91017_CHICK (Gallus gallus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGALG00000002514 T37616_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.955
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.955
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.758
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.758
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000003954 RRM 239 303
ENSGALP00000003954 RRM 313 379
ENSGALP00000040026 RRM 26 93

Links

Other RRM family RBPs
Other Gallus gallus RBPs

114 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NONO Homo sapiens ENSG00000147140 D 0.758
SFPQ Homo sapiens ENSG00000116560 D 0.955
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.788
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.826
NONO Procavia capensis ENSPCAG00000002541 I 0.758
SFPQ Procavia capensis ENSPCAG00000006164 I 0.955
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.955
ENSPPYG00000005186 Pongo pygmaeus ENSPPYG00000005186 I 0.758
ENSPPYG00000020451 Pongo pygmaeus ENSPPYG00000020451 I 0.758
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.955
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.758
XR_025068.1 Pan troglodytes ENSPTRG00000022010 I 0.758
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.880
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.955
NONO Otolemur garnettii ENSOGAG00000004834 I 0.758
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.758
LOC697263 Macaca mulatta ENSMMUG00000020481 I 0.758
NONO Monodelphis domestica ENSMODG00000004445 I 0.750
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.758
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.977
Pspc1 Mus musculus ENSMUSG00000021938 I 0.758
Sfpq Mus musculus ENSMUSG00000028820 I 0.955
Nono Mus musculus ENSMUSG00000031311 I 0.758
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.970
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.955
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.758
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.758
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.750
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.758
Nono Rattus norvegicus ENSRNOG00000003689 I 0.758
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.909
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.750
NONO Tursiops truncatus ENSTTRG00000009605 I 0.758
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.955
NONO Vicugna pacos ENSVPAG00000002272 I 0.758
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.955
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.894
nono Xenopus tropicalis ENSXETG00000020868 I 0.712
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.955
Ame_R014248 Ailuropoda melanoleuca Ame_R014248 I 0.758
Ame_R017809 Ailuropoda melanoleuca Ame_R017809 I 0.758
AAH45128 Xenopus laevis AAH45128 I 0.720
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.879
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.871
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.955
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.758
ENSRNOG00000030425 Rattus norvegicus ENSRNOG00000030425 I 0.712
PSPC1 Sorex araneus ENSSARG00000000888 I 0.758
NONO Sorex araneus ENSSARG00000007959 I 0.750
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.750
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.955
NONO Spermophilus tridecemlineatus ENSSTOG00000015869 I 0.744
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.909
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 1.000
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.742
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.773
BAE54372 Xenopus laevis BAE54372 I 0.720
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.758
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.773
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.735
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.758
TAF1 Callithrix jacchus ENSCJAG00000013390 I 0.758
ENSCJAG00000035318 Callithrix jacchus ENSCJAG00000035318 I 0.795
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.758
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.955
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.750
sfpq Danio rerio ENSDARG00000011564 I 0.803
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.925
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.750
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.955
SFPQ Choloepus hoffmanni ENSCHOG00000009131 I 0.759
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.758
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.947
NONO Anolis carolinensis ENSACAG00000015026 I 0.705
PSPC1_BOVIN Bos taurus ENSBTAG00000003934 I 0.750
Q2KJ42_BOVIN Bos taurus ENSBTAG00000012152 I 0.758
SFPQ Bos taurus ENSBTAG00000016328 I 0.955
LOC607081 Canis familiaris ENSCAFG00000003207 I 0.758
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.955
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.758
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.864
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.932
LOC100069588 Equus caballus ENSECAG00000000642 I 0.955
NONO Equus caballus ENSECAG00000008502 I 0.758
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.742
NONO Gorilla gorilla ENSGGOG00000006194 I 0.758
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.955
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.758
NONO Loxodonta africana ENSLAFG00000013422 I 0.758
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.955
PSPC1 Macropus eugenii ENSMEUG00000000476 I 0.758
NONO Macropus eugenii ENSMEUG00000004294 I 0.744
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.977
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.780
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.742
NONO Microcebus murinus ENSMICG00000000232 I 0.758
SFPQ Microcebus murinus ENSMICG00000011755 I 0.955
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.773
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.773
Q5ZIZ5_CHICK Gallus gallus ENSGALG00000005507 I 0.742
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.758
SFPQ Echinops telfairi ENSETEG00000001095 I 0.955
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.758
NONO Myotis lucifugus ENSMLUG00000002489 I 0.735
PSPC1 Felis catus ENSFCAG00000013701 I 0.735
PSPC1 Homo sapiens ENSG00000121390 I 0.758
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.842
NONO Echinops telfairi ENSETEG00000013823 N 0.757
NONO Felis catus ENSFCAG00000014807 N 0.757
SFPQ Sorex araneus ENSSARG00000006409 N 0.836
pspc1 Danio rerio ENSDARG00000006621 N 0.720
NONO Choloepus hoffmanni ENSCHOG00000002343 N 0.757
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 N 0.712
SFPQ Felis catus ENSFCAG00000012305 N 0.836