FUBP1 (Loxodonta africana)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSLAFG00000003273 T18919_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.770
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.770
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.770
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.770
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000002720 KH 121 183
ENSLAFP00000002720 KH 206 270
ENSLAFP00000002720 KH 296 358
ENSLAFP00000002720 KH 397 462
ENSLAFP00000029312 KH 5 69
ENSLAFP00000029312 KH 92 156
ENSLAFP00000029312 KH 182 244
ENSLAFP00000029312 KH 283 348

Links

Other KH family RBPs
Other Loxodonta africana RBPs

111 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CHGG_00532 Chaetomium globosum CHGG_00532 N 0.000
estExt_Genewise1.C_33759 Myceliophthora thermophila estExt_Genewise1.C_33759 N 0.000
estExt_Genewise1Plus.C_11025 Neurospora discreta estExt_Genewise1Plus.C_11025 N 0.000
estExt_Genewise1Plus.C_70990 Cryphonectria parasitica estExt_Genewise1Plus.C_70990 N 0.000
estExt_Genewise1Plus.C_90498 Neurospora tetrasperma estExt_Genewise1Plus.C_90498 N 0.000
e_gw1.1.40.1 Trichoderma atroviride e_gw1.1.40.1 N 0.000
e_gw1.4.4.1 Trichoderma reesei e_gw1.4.4.1 N 0.000
e_gw1.5.1025.1 Nectria haematococca e_gw1.5.1025.1 N 0.000
FGSG_09904 Fusarium graminearum FGSG_09904 N 0.000
FOXG_05520 Fusarium oxysporum FOXG_05520 N 0.000
FVEG_02619 Fusarium verticillioides FVEG_02619 N 0.000
genemark.2690_g Thielavia terrestris genemark.2690_g N 0.000
NCU04611 Neurospora crassa NCU04611 N 0.000
Pa_2_830 Podospora anserina Pa_2_830 N 0.000