ENSCAFG00000016707 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000016707 T35144_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.807
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.807
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.807
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.800
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000024568 RRM 2 55
ENSCAFP00000024568 RRM 88 157

Links

Other RRM family RBPs
Other Canis familiaris RBPs

139 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.000
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.000
1600010087 Ostreococcus tauri 1600010087 N 0.000
29868.m000351 Ricinus communis 29868.m000351 N 0.000
32497 Aureococcus anophagefferens 32497 N 0.000
68671 Helobdella robusta 68671 N 0.000
AAEL005909 Aedes aegypti AAEL005909 N 0.000
AAH57709 Xenopus laevis AAH57709 N 0.000
AC008073.5 Homo sapiens ENSG00000115128 N 0.000
AGAP002780 Anopheles gambiae AGAP002780 N 0.000
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.000
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.000
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.000
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.000
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.000
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.000
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.000
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.000
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.000
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.000
CBG06987 Caenorhabditis briggsae CBG06987 N 0.000
CBN08400 Caenorhabditis brenneri CBN08400 N 0.000
CG13298 Drosophila melanogaster FBgn0035692 N 0.000
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.000
CJA01433 Caenorhabditis japonica CJA01433 N 0.000
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.000
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.000
CRE22109 Caenorhabditis remanei CRE22109 N 0.000
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.000
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.000
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.000
EDO06533.1 Babesia bovis EDO06533.1 N 0.000
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.000
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.000
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.000
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.000
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.000
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.000
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.000
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.000
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.000
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.000
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.000
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.000
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.000
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.000
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.000
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.000
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.000
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.000
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.000
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.000
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.000
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.000
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.000
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.000
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.000
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.000
estExt_fgenesh1_pg.C_120176 Monosiga brevicollis estExt_fgenesh1_pg.C_120176 N 0.000
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.000
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.000
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.000
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.000
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.000
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.000
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.000
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.000
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.000
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.000
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.000
estExt_Genewise1Plus.C_chr_60999 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_60999 N 0.000
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.000
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.000
eugene.1500010066 Ostreococcus lucimarinus eugene.1500010066 N 0.000
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.000
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.000
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.000
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.000
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.000
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.000
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.000
GD13137 Drosophila simulans FBgn0184859 N 0.000
GE20495 Drosophila yakuba FBgn0068445 N 0.000
GF10910 Drosophila ananassae FBgn0087950 N 0.000
GG14070 Drosophila erecta FBgn0106332 N 0.000
GH16287 Drosophila grimshawi FBgn0123758 N 0.000
GI13232 Drosophila mojavensis FBgn0135989 N 0.000
GJ12004 Drosophila virilis FBgn0199256 N 0.000
GK17258 Drosophila willistoni FBgn0219257 N 0.000
GL22529 Drosophila persimilis FBgn0160121 N 0.000
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.000
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.000
GM13852 Drosophila sechellia FBgn0168783 N 0.000
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.000
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.000
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.000
ISCW024082 Ixodes scapularis ISCW024082 N 0.000
LOAG_04189 Loa loa LOAG_04189 N 0.000
LOC100056247 Equus caballus ENSECAG00000015618 N 0.000
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.000
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.000
MDP0000185506 Malus x domestica MDP0000185506 N 0.000
MDP0000916880 Malus x domestica MDP0000916880 N 0.000
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.000
mgf016428m Mimulus guttatus mgf016428m N 0.000
Minc01156 Meloidogyne incognita Minc01156 N 0.000
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.000
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.000
PFL1200c Plasmodium falciparum PFL1200c N 0.000
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.000
PHUM617060 Pediculus humanus PHUM617060 N 0.000
PITG_10282 Phytophthora infestans PITG_10282 N 0.000
PK21780.1 Cannabis sativa PK21780.1 N 0.000
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.000
ppa013405m Prunus persica ppa013405m N 0.000
ppa013407m Prunus persica ppa013407m N 0.000
PPA24922 Pristionchus pacificus PPA24922 N 0.000
PVX_123875 Plasmodium vivax PVX_123875 N 0.000
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.000
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.000
SB01G003790 Sorghum bicolor Sb01g003790 N 0.000
sf3b14 Danio rerio ENSDARG00000009753 N 0.000
SF3B14 Gallus gallus ENSGALG00000016501 N 0.000
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.000
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.000
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.000
Smp_032060 Schistosoma mansoni Smp_032060 N 0.000
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.000
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.000
s_454910 Phytophthora sojae s_454910 N 0.000
TA13725 Theileria annulata TA13725 N 0.000
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.000
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.000
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.000
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.000
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.000
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.000
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.000