PTBP2 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000013557 T40214_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.769
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.769
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.769
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000017003 RRM 53 108
ENSORLP00000017003 RRM 173 239
ENSORLP00000017003 RRM 354 421
ENSORLP00000017003 RRM 472 537

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

61 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAF00041 Xenopus laevis AAF00041 I 0.762
AAH45068 Xenopus laevis AAH45068 I 0.754
AAH97557 Xenopus laevis AAH97557 I 0.708
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.842
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.715
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.838
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.769
LOC100057336 Equus caballus ENSECAG00000015783 I 0.838
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.758
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.764
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.723
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.764
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.750
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.742
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.765
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.754
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.750
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.758
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.701
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.707
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.714
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.754
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.709
PTBP1 Homo sapiens ENSG00000011304 D 0.769
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.754
PTBP1 Equus caballus ENSECAG00000018845 I 0.746
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.710
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.762
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.765
ptbp1a Danio rerio ENSDARG00000019362 I 0.720
ptbp1b Danio rerio ENSDARG00000031907 I 0.715
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.753
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.838
PTBP2 Danio rerio ENSDARG00000015901 I 0.884
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.842
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.888
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.842
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.842
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.842
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.842
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.842
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.842
PTBP2 Dasypus novemcinctus ENSDNOG00000017687 N 0.712
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.842
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.842
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.849
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.768
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.826
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.969
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.842
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.838
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.847
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.842
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.831
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.842
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.842
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.842
PTBP2 Homo sapiens ENSG00000117569 I 0.842
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.758
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.849
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.769