CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PHUM290500
(
Pediculus humanus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PHUM290500
T45341_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.860
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.860
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PHUM290500-PA
RRM
6
68
VYIGGLPYGVKDRDIERFFKGYGRIRDILIKNGYGFVEFDDYRDADDAVYELNGKDLLGERVS
PHUM290500-PA
RRM
190
255
LIVENLSSRVSWQDLKDYMRQAGEVTYADAHKNRRNEGIVEFSSSSDLKAAIDKLDGTELNGRKIR
Links
Other
RRM
family RBPs
Other
Pediculus humanus
RBPs
133 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH74368
Xenopus laevis
AAH74368
N
0.000
Ame_R001963
Ailuropoda melanoleuca
Ame_R001963
N
0.000
ENSCAFG00000003953
Canis familiaris
ENSCAFG00000003953
N
0.000
ENSCPOG00000000948
Cavia porcellus
ENSCPOG00000000948
N
0.000
ENSGGOG00000023977
Gorilla gorilla
ENSGGOG00000023977
N
0.000
ENSMMUG00000001017
Macaca mulatta
ENSMMUG00000001017
N
0.000
ENSMODG00000013686
Monodelphis domestica
ENSMODG00000013686
N
0.000
ENSOCUG00000010180
Oryctolagus cuniculus
ENSOCUG00000010180
N
0.000
ENSOGAG00000009877
Otolemur garnettii
ENSOGAG00000009877
N
0.000
ENSPPYG00000018057
Pongo pygmaeus
ENSPPYG00000018057
N
0.000
ENSPPYG00000020255
Pongo pygmaeus
ENSPPYG00000020255
N
0.000
LOC100065893
Equus caballus
ENSECAG00000017929
N
0.000
MKRN1
Sus scrofa
ENSSSCG00000016498
N
0.000
MKRN1
Tursiops truncatus
ENSTTRG00000009528
N
0.000
MKRN1
Ochotona princeps
ENSOPRG00000010353
N
0.000
MKRN1
Procavia capensis
ENSPCAG00000014683
N
0.000
MKRN1
Tarsius syrichta
ENSTSYG00000009996
N
0.000
MKRN1
Sorex araneus
ENSSARG00000013683
N
0.000
Mkrn1
Mus musculus
ENSMUSG00000029922
N
0.000
MKRN1
Anolis carolinensis
ENSACAG00000010934
N
0.000
MKRN1
Homo sapiens
ENSG00000133606
N
0.000
mkrn1
Danio rerio
ENSDARG00000041665
N
0.000
MKRN1
Callithrix jacchus
ENSCJAG00000004068
N
0.000
MKRN1
Choloepus hoffmanni
ENSCHOG00000011015
N
0.000
MKRN1
Loxodonta africana
ENSLAFG00000018408
N
0.000
MKRN1
Meleagris gallopavo
ENSMGAG00000013208
N
0.000
MKRN1
Microcebus murinus
ENSMICG00000002114
N
0.000
MKRN1
Macaca mulatta
ENSMMUG00000010420
N
0.000
MKRN1
Felis catus
ENSFCAG00000013043
N
0.000
MKRN1_MACEU
Macropus eugenii
ENSMEUG00000007399
N
0.000
Q68FR1_RAT
Rattus norvegicus
ENSRNOG00000009280
N
0.000
Q6GLT5
Xenopus laevis
Q6GLT5
N
0.000
Q9PTI4_CHICK
Gallus gallus
ENSGALG00000012852
N
0.000
XR_024878.1
Pan troglodytes
ENSPTRG00000019766
N
0.000