e_gw1.89.27.1 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw1.89.27.1 T50143_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.760
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.760
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.89.27.1 RRM 5 67
e_gw1.89.27.1 RRM 117 182

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

131 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A6QQP0_BOVIN Bos taurus ENSBTAG00000008771 N 0.000
AAI08588 Xenopus laevis AAI08588 N 0.000
AAI34826 Xenopus laevis AAI34826 N 0.000
Ame_R005511 Ailuropoda melanoleuca Ame_R005511 N 0.000
Ame_R017061 Ailuropoda melanoleuca Ame_R017061 N 0.000
ENSBTAG00000039263 Bos taurus ENSBTAG00000039263 N 0.000
ENSDORG00000015835 Dipodomys ordii ENSDORG00000015835 N 0.000
ENSMODG00000003473 Monodelphis domestica ENSMODG00000003473 N 0.000
ENSOCUG00000000552 Oryctolagus cuniculus ENSOCUG00000000552 N 0.000
ENSOCUG00000024611 Oryctolagus cuniculus ENSOCUG00000024611 N 0.000
ENSPPYG00000006452 Pongo pygmaeus ENSPPYG00000006452 N 0.000
ENSPPYG00000009506 Pongo pygmaeus ENSPPYG00000009506 N 0.000
ENSRNOG00000024645 Rattus norvegicus ENSRNOG00000024645 N 0.000
HNRNPM Tetraodon nigroviridis ENSTNIG00000015530 N 0.000
HNRNPM Myotis lucifugus ENSMLUG00000006696 N 0.000
HNRNPM Microcebus murinus ENSMICG00000002532 N 0.000
HNRNPM Pan troglodytes ENSPTRG00000010424 N 0.000
HNRNPM Takifugu rubripes ENSTRUG00000013783 N 0.000
HNRNPM Meleagris gallopavo ENSMGAG00000000700 N 0.000
HNRNPM Tupaia belangeri ENSTBEG00000008718 N 0.000
Hnrnpm Mus musculus ENSMUSG00000059208 N 0.000
HNRNPM Spermophilus tridecemlineatus ENSSTOG00000008112 N 0.000
HNRNPM Otolemur garnettii ENSOGAG00000003234 N 0.000
HNRNPM Sus scrofa ENSSSCG00000013602 N 0.000
HNRNPM Ochotona princeps ENSOPRG00000001943 N 0.000
HNRNPM Sorex araneus ENSSARG00000000267 N 0.000
HNRNPM Procavia capensis ENSPCAG00000009678 N 0.000
HNRNPM Macropus eugenii ENSMEUG00000004789 N 0.000
HNRNPM Loxodonta africana ENSLAFG00000013603 N 0.000
HNRNPM Felis catus ENSFCAG00000015218 N 0.000
HNRNPM Echinops telfairi ENSETEG00000019712 N 0.000
HNRNPM Equus caballus ENSECAG00000023868 N 0.000
HNRNPM Dasypus novemcinctus ENSDNOG00000012157 N 0.000
HNRNPM Cavia porcellus ENSCPOG00000015182 N 0.000
HNRNPM Oryzias latipes ENSORLG00000005400 N 0.000
HNRNPM Callithrix jacchus ENSCJAG00000010802 N 0.000
HNRNPM Choloepus hoffmanni ENSCHOG00000013627 N 0.000
HNRNPM Canis familiaris ENSCAFG00000018524 N 0.000
hnrnpm Xenopus tropicalis ENSXETG00000001777 N 0.000
HNRNPM Gasterosteus aculeatus ENSGACG00000010265 N 0.000
HNRNPM Gorilla gorilla ENSGGOG00000003498 N 0.000
HNRNPM Homo sapiens ENSG00000099783 N 0.000
HNRNPM Tursiops truncatus ENSTTRG00000009769 N 0.000
HNRNPM Macaca mulatta ENSMMUG00000018806 N 0.000
Hnrpm Rattus norvegicus ENSRNOG00000007921 N 0.000
LOC100070256 Equus caballus ENSECAG00000005741 N 0.000
MYEF2 Tetraodon nigroviridis ENSTNIG00000009526 N 0.000
MYEF2 Sus scrofa ENSSSCG00000004661 N 0.000
MYEF2 Takifugu rubripes ENSTRUG00000016967 N 0.000
MYEF2 Tarsius syrichta ENSTSYG00000010575 N 0.000
myef2 Xenopus tropicalis ENSXETG00000018412 N 0.000
MYEF2 Tursiops truncatus ENSTTRG00000008076 N 0.000
MYEF2 Taeniopygia guttata ENSTGUG00000007130 N 0.000
MYEF2 Vicugna pacos ENSVPAG00000004721 N 0.000
Myef2 Rattus norvegicus ENSRNOG00000005258 N 0.000
MYEF2 Pan troglodytes ENSPTRG00000007042 N 0.000
MYEF2 Loxodonta africana ENSLAFG00000012990 N 0.000
MYEF2 Gorilla gorilla ENSGGOG00000014968 N 0.000
MYEF2 Gasterosteus aculeatus ENSGACG00000016759 N 0.000
MYEF2 Homo sapiens ENSG00000104177 N 0.000
MYEF2 Anolis carolinensis ENSACAG00000004806 N 0.000
myef2 Danio rerio ENSDARG00000059398 N 0.000
MYEF2 Callithrix jacchus ENSCJAG00000001875 N 0.000
MYEF2 Canis familiaris ENSCAFG00000014008 N 0.000
MYEF2 Meleagris gallopavo ENSMGAG00000006915 N 0.000
MYEF2 Macaca mulatta ENSMMUG00000018834 N 0.000
MYEF2 Procavia capensis ENSPCAG00000016660 N 0.000
Myef2 Mus musculus ENSMUSG00000027201 N 0.000
MYEF2 Oryzias latipes ENSORLG00000002730 N 0.000
MYEF2 Otolemur garnettii ENSOGAG00000010907 N 0.000
MYEF2 Oryctolagus cuniculus ENSOCUG00000013043 N 0.000
MYEF2 Cavia porcellus ENSCPOG00000010584 N 0.000
MYEF2 Monodelphis domestica ENSMODG00000002744 N 0.000
Q3SYX2_BOVIN Bos taurus ENSBTAG00000021039 N 0.000
Q5ZHY2_CHICK Gallus gallus ENSGALG00000004905 N 0.000
Q5ZL80_CHICK Gallus gallus ENSGALG00000000377 N 0.000
XM_001365870.1 Monodelphis domestica ENSMODG00000003801 N 0.000