CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
e_gw1.89.27.1
(
Lottia gigantea
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.89.27.1
T50143_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.760
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.760
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.89.27.1
RRM
5
67
IYIGKLSHHARERDVDRFFRSYGRIRDIQLKNGYGFIEFEDYRDADDAVYELNGKDLCGERIY
e_gw1.89.27.1
RRM
117
182
IIVENLSSRVSWQDLKDYMRQAGEVTYADAHKKHKNEGVVEFASYTDMKTALDKLDGTEINGRKIK
Links
Other
RRM
family RBPs
Other
Lottia gigantea
RBPs
131 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Dp1
Drosophila melanogaster
FBgn0027835
N
0.000
GA18708-RA
Drosophila pseudoobscura
FBgn0078708
N
0.000
GD11380
Drosophila simulans
FBgn0183129
N
0.000
GE11968
Drosophila yakuba
FBgn0229746
N
0.000
GF12176
Drosophila ananassae
FBgn0089215
N
0.000
GG21892
Drosophila erecta
FBgn0114070
N
0.000
GH21672
Drosophila grimshawi
FBgn0129133
N
0.000
GI20125
Drosophila mojavensis
FBgn0142861
N
0.000
GJ19895
Drosophila virilis
FBgn0207037
N
0.000
GK22993
Drosophila willistoni
FBgn0224955
N
0.000
GM21884
Drosophila sechellia
FBgn0176761
N
0.000