fgeneshTA2_pg.C_scaffold_8000081 (Trichoplax adhaerens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgeneshTA2_pg.C_scaffold_8000081 T52537_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.855
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.848
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.810
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgeneshTA2_pg.C_scaffold_8000081 RRM 78 142
fgeneshTA2_pg.C_scaffold_8000081 RRM 186 250

Links

Other RRM family RBPs
Other Trichoplax adhaerens RBPs

145 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
111676 Helobdella robusta 111676 I 0.756
69117 Helobdella robusta 69117 N 0.718
79994 Helobdella robusta 79994 I 0.722
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.797
AAEL012065 Aedes aegypti AAEL012065 I 0.733
ADH10187 Xenopus laevis ADH10187 I 0.797
AGAP002296 Anopheles gambiae AGAP002296 I 0.838
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.799
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.804
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.835
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.797
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.806
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.835
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.835
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.828
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.835
CPEB2 Gallus gallus ENSGALG00000014516 I 0.835
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.828
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.835
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.835
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.835
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.835
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.835
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.828
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.835
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.835
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.835
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.803
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.835
CPEB2 Sorex araneus ENSSARG00000010559 I 0.737
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.835
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.835
CPEB2 Homo sapiens ENSG00000137449 D 0.835
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.835
CPEB2 Danio rerio ENSDARG00000052604 I 0.739
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.835
CPEB2 Bos taurus ENSBTAG00000019847 I 0.835
CPEB2 Equus caballus ENSECAG00000008722 I 0.835
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.835
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.737
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.784
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.835
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.797
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.804
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.804
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.804
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.799
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.804
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.804
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.789
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.804
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.804
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.804
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.717
CPEB3 Bos taurus ENSBTAG00000015450 I 0.804
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.804
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.804
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.799
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.793
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.732
CPEB3 Gallus gallus ENSGALG00000006912 I 0.804
CPEB3 Equus caballus ENSECAG00000000077 I 0.799
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.793
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.804
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.804
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.804
cpeb3 Danio rerio ENSDARG00000060103 I 0.799
CPEB3 Homo sapiens ENSG00000107864 I 0.804
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.804
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.791
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.804
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.804
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.804
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.804
CPEB3 Sorex araneus ENSSARG00000001994 I 0.799
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.710
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.797
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.797
CPEB4 Sorex araneus ENSSARG00000013389 I 0.783
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.791
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.797
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.790
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.797
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.790
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.797
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.790
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.791
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.790
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.797
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.786
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.797
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.797
CPEB4 Gallus gallus ENSGALG00000014074 I 0.786
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.790
CPEB4 Homo sapiens ENSG00000113742 D 0.797
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.797
CPEB4 Danio rerio ENSDARG00000060495 I 0.790
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.797
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.797
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.797
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.797
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.797
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.797
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.797
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.790
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.790
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.790
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.797
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.797
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.797
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.786
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.804
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.818
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.835
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.827
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.804
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.835
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.797
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.850
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.789
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.826
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.813
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.827
GE21274 Drosophila yakuba FBgn0238542 I 0.827
GF10140 Drosophila ananassae FBgn0087181 I 0.827
GG15051 Drosophila erecta FBgn0107305 I 0.827
GH16131 Drosophila grimshawi FBgn0123602 I 0.833
GI12400 Drosophila mojavensis FBgn0135157 I 0.827
GJ12289 Drosophila virilis FBgn0199538 I 0.827
GK17460 Drosophila willistoni FBgn0219459 I 0.827
GL20808 Drosophila persimilis FBgn0158403 I 0.827
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.807
ISCW010113 Ixodes scapularis ISCW010113 I 0.785
LOC100058918 Equus caballus ENSECAG00000016921 I 0.797
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.804
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.835
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.790
orb2 Drosophila melanogaster FBgn0262573 D 0.827
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.820
PHUM335520 Pediculus humanus PHUM335520 I 0.833
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.785
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.793
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.815
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.793
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.835