CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Q08DJ3_BOVIN
(
Bos taurus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSBTAG00000008926
T18428_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.770
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.770
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.770
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.770
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000011751
KH
63
125
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL
ENSBTAP00000011751
KH
148
212
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMV
ENSBTAP00000011751
KH
238
300
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEII
ENSBTAP00000011751
KH
339
404
EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLI
Links
Other
KH
family RBPs
Other
Bos taurus
RBPs
110 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.795
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.791
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.798
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.791
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.798
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.756
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.779
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.760
FUBP3
Felis catus
ENSFCAG00000005113
N
0.787
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.787
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.795
FUBP3
Homo sapiens
ENSG00000107164
N
0.795
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.791
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.795
FUBP3
Meleagris gallopavo
ENSMGAG00000005342
N
0.787
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.798
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.779
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.787
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.756
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.791
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.791
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.721
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.764
FUBP3
Otolemur garnettii
ENSOGAG00000007555
N
0.000
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.795
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.795
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.771
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.798
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.791
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.783
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.764
FUBP3
Takifugu rubripes
ENSTRUG00000018658
N
0.713
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.767
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.725
AAH60400
Xenopus laevis
AAH60400
N
0.783
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.783