ENSGACG00000002034 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000002034 T37393_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.835
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.835
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.707
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000002643 RRM 260 324
ENSGACP00000002643 RRM 334 401
ENSGACP00000002654 RRM 251 315
ENSGACP00000002654 RRM 325 392
ENSGACP00000002658 RRM 219 283
ENSGACP00000002658 RRM 293 360

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

97 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.835
Ame_R017809 Ailuropoda melanoleuca Ame_R017809 I 0.707
Ame_R014248 Ailuropoda melanoleuca Ame_R014248 I 0.752
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.767
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.820
NONO Anolis carolinensis ENSACAG00000015026 I 0.000
Q2KJ42_BOVIN Bos taurus ENSBTAG00000012152 I 0.707
SFPQ Bos taurus ENSBTAG00000016328 I 0.835
PSPC1_BOVIN Bos taurus ENSBTAG00000003934 I 0.744
ENSCJAG00000035318 Callithrix jacchus ENSCJAG00000035318 I 0.000
TAF1 Callithrix jacchus ENSCJAG00000013390 I 0.707
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.000
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.835
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.752
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.737
LOC607081 Canis familiaris ENSCAFG00000003207 I 0.707
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.835
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.707
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.812
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.000
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.835
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.752
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.707
SFPQ Choloepus hoffmanni ENSCHOG00000009131 I 0.000
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.752
NONO Choloepus hoffmanni ENSCHOG00000002343 N 0.000
sfpq Danio rerio ENSDARG00000011564 I 0.835
pspc1 Danio rerio ENSDARG00000006621 N 0.707
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 N 0.707
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.744
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.805
SFPQ Echinops telfairi ENSETEG00000001095 I 0.835
NONO Echinops telfairi ENSETEG00000013823 N 0.000
NONO Equus caballus ENSECAG00000008502 I 0.707
LOC100069588 Equus caballus ENSECAG00000000642 I 0.835
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.707
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.737
PSPC1 Felis catus ENSFCAG00000013701 I 0.722
SFPQ Felis catus ENSFCAG00000012305 N 0.000
NONO Felis catus ENSFCAG00000014807 N 0.000
Q5ZIZ5_CHICK Gallus gallus ENSGALG00000005507 I 0.707
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.767
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.767
NONO Gorilla gorilla ENSGGOG00000006194 I 0.707
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.835
SFPQ Homo sapiens ENSG00000116560 D 0.835
NONO Homo sapiens ENSG00000147140 D 0.707
PSPC1 Homo sapiens ENSG00000121390 I 0.752
NONO Loxodonta africana ENSLAFG00000013422 I 0.707
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.835
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.752
LOC697263 Macaca mulatta ENSMMUG00000020481 I 0.707
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.752
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.000
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.842
NONO Macropus eugenii ENSMEUG00000004294 I 0.722
PSPC1 Macropus eugenii ENSMEUG00000000476 I 0.752
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.000
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.707
SFPQ Microcebus murinus ENSMICG00000011755 I 0.835
NONO Microcebus murinus ENSMICG00000000232 I 0.707
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.752
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.842
NONO Monodelphis domestica ENSMODG00000004445 I 0.714
Pspc1 Mus musculus ENSMUSG00000021938 I 0.752
Sfpq Mus musculus ENSMUSG00000028820 I 0.835
Nono Mus musculus ENSMUSG00000031311 I 0.707
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.752
NONO Myotis lucifugus ENSMLUG00000002489 I 0.000
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.835
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.850
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.835
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.752
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.707
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.895
NONO Otolemur garnettii ENSOGAG00000004834 I 0.707
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.752
XR_025068.1 Pan troglodytes ENSPTRG00000022010 I 0.707
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.835
ENSPPYG00000020451 Pongo pygmaeus ENSPPYG00000020451 I 0.707
ENSPPYG00000005186 Pongo pygmaeus ENSPPYG00000005186 I 0.752
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.835
NONO Procavia capensis ENSPCAG00000002541 I 0.707
SFPQ Procavia capensis ENSPCAG00000006164 I 0.835
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.774
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.707
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.744
Nono Rattus norvegicus ENSRNOG00000003689 I 0.707
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.752
ENSRNOG00000030425 Rattus norvegicus ENSRNOG00000030425 I 0.000
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.835
NONO Sorex araneus ENSSARG00000007959 I 0.000
SFPQ Sorex araneus ENSSARG00000006409 N 0.000
PSPC1 Sorex araneus ENSSARG00000000888 I 0.752
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.835
NONO Spermophilus tridecemlineatus ENSSTOG00000015869 I 0.707
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.744
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.707
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.842
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.767
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.925
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.782
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.925
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.789
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.835
NONO Tursiops truncatus ENSTTRG00000009605 I 0.707
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.744
NONO Vicugna pacos ENSVPAG00000002272 I 0.707
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.835
BAE54372 Xenopus laevis BAE54372 I 0.000
AAH45128 Xenopus laevis AAH45128 I 0.000
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.805
nono Xenopus tropicalis ENSXETG00000020868 I 0.000