LOC_Os05g39030 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os05g39030 T11529_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os05g39030.1 CCHC ZF 39 55
LOC_Os05g39030.1 CCHC ZF 211 228

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

10 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
156918 Helobdella robusta 156918 I 0.000
AAEL015143 Aedes aegypti AAEL015143 I 0.000
AAG36902 Xenopus laevis AAG36902 I 0.000
AAH45063 Xenopus laevis AAH45063 I 0.000
AAR26262 Xenopus laevis AAR26262 I 0.000
AGAP005117 Anopheles gambiae AGAP005117 I 0.000
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.000
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.000
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.000
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.000
Bm1_48895 Brugia malayi Bm1_48895 I 0.000
pabp-2 Caenorhabditis elegans C17E4.5 I 0.000
CBG03741 Caenorhabditis briggsae CBG03741 I 0.000
CBN00953 Caenorhabditis brenneri CBN00953 I 0.000
CBN10290 Caenorhabditis brenneri CBN10290 I 0.000
CBN16301 Caenorhabditis brenneri CBN16301 I 0.000
CJA15148 Caenorhabditis japonica CJA15148 I 0.000
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.000
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.000
CRE07990 Caenorhabditis remanei CRE07990 I 0.000
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.000
EDP44971.1 Malassezia globosa EDP44971.1 N 0.000
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.000
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.000
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.000
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.000
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.000
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.000
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.000
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.000
PABPN1L Cavia porcellus ENSCPOG00000025951 I 0.000
ENSCSAVG00000002001 Ciona savignyi ENSCSAVG00000002001 I 0.000
pabpn1 Danio rerio ENSDARG00000045373 I 0.000
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.000
LOC100055599 Equus caballus ENSECAG00000011652 I 0.000
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.000
PABPN1 Homo sapiens ENSG00000100836 D 0.000
PABPN1L Homo sapiens ENSG00000205022 I 0.000
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.000
PABPN1L Gasterosteus aculeatus ENSGACG00000015428 I 0.000
PABPN1 Gallus gallus ENSGALG00000006242 I 0.000
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.000
PABPN1L Loxodonta africana ENSLAFG00000025902 I 0.000
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.000
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.000
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.000
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.000
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.000
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.000
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.000
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.000
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.000
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.000
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.000
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.000
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.000
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.000
PABPN1 Procavia capensis ENSPCAG00000005902 I 0.000
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.000
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.000
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.000
PABPN1L Pan troglodytes ENSPTRG00000031120 I 0.000
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.000
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.000
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.000
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.000
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.000
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.000
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.000
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.000
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.000
estExt_fgenesh1_pm.C_1750006 Capitella teleta estExt_fgenesh1_pm.C_1750006 I 0.000
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.000
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.000
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.000
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.000
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.000
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.000
Pabp2 Drosophila melanogaster FBgn0005648 I 0.000
Pabp2 Drosophila yakuba FBgn0068105 I 0.000
GA15278-RA Drosophila pseudoobscura FBgn0075302 I 0.000
GF13666 Drosophila ananassae FBgn0090694 I 0.000
GG23338 Drosophila erecta FBgn0115489 I 0.000
GH21908 Drosophila grimshawi FBgn0129369 I 0.000
GI19259 Drosophila mojavensis FBgn0141998 I 0.000
GL17107 Drosophila persimilis FBgn0154711 I 0.000
GM21011 Drosophila sechellia FBgn0175892 I 0.000
GD10545 Drosophila simulans FBgn0182316 I 0.000
GJ22134 Drosophila virilis FBgn0209248 I 0.000
GK23192 Drosophila willistoni FBgn0225154 I 0.000
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.000
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.000
LOAG_03634 Loa loa LOAG_03634 I 0.000
PGTG_01300 Puccinia graminis PGTG_01300 N 0.000
PHUM037550 Pediculus humanus PHUM037550 I 0.000
PTTG_05043 Puccinia triticina PTTG_05043 N 0.000
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.000
Q9DDY9 Xenopus laevis Q9DDY9 I 0.000
Sjc_0053490 Schistosoma japonicum Sjc_0053490 I 0.000
Smp_007630 Schistosoma mansoni Smp_007630 I 0.000
SNAPOd2T00003132001 Oikopleura dioica SNAPOd2T00003132001 I 0.000
SNAPOd2T00018428001 Oikopleura dioica SNAPOd2T00018428001 I 0.000
UM02401 Ustilago maydis UM02401 N 0.000
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.000
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.000
XP_799120.1 Strongylocentrotus purpuratus XP_799120.1 I 0.000