CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FUBP1
(
Gorilla gorilla
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSGGOG00000027554
T18912_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.774
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.774
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.774
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.774
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000017520
KH
92
154
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL
ENSGGOP00000017520
KH
177
241
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMV
ENSGGOP00000017520
KH
267
329
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEII
ENSGGOP00000017520
KH
368
433
EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLI
ENSGGOP00000025250
KH
123
185
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL
ENSGGOP00000025250
KH
208
272
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMV
ENSGGOP00000025250
KH
298
360
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEII
ENSGGOP00000025250
KH
399
464
EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLI
Links
Other
KH
family RBPs
Other
Gorilla gorilla
RBPs
112 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH44277
Xenopus laevis
AAH44277
I
0.922
AAH60400
Xenopus laevis
AAH60400
N
0.787
AAH70981
Xenopus laevis
AAH70981
I
0.930
AAI61696
Xenopus laevis
AAI61696
I
0.747
AAI69815
Xenopus laevis
AAI69815
I
0.930
AAI69923
Xenopus laevis
AAI69923
I
0.743
AAN77160
Xenopus laevis
AAN77160
I
0.743
AAN77161
Xenopus laevis
AAN77161
I
0.903
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.798
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.992
Ame_R016412
Ailuropoda melanoleuca
Ame_R016412
I
0.774
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.988
KHSRP
Anolis carolinensis
ENSACAG00000015398
I
0.774
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.996
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.795
LOC505564
Bos taurus
ENSBTAG00000021018
I
0.774
KHSRP
Canis familiaris
ENSCAFG00000018667
I
0.774
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.795
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.996
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.992
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.996
KHSRP
Callithrix jacchus
ENSCJAG00000016627
I
0.774
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.802
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.996
KHSRP
Cavia porcellus
ENSCPOG00000005140
I
0.774
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.802
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.752
KHSRP
Danio rerio
ENSDARG00000026489
I
0.735
fubp1
Danio rerio
ENSDARG00000029248
I
0.856
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.779
Khsrp
Dipodomys ordii
ENSDORG00000002447
I
0.770
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.996
FUBP1
Equus caballus
ENSECAG00000010867
I
0.996
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.764
LOC100065608
Equus caballus
ENSECAG00000018305
I
0.774
KHSRP
Felis catus
ENSFCAG00000003731
I
0.774
FUBP3
Felis catus
ENSFCAG00000005113
N
0.791
KHSRP
Homo sapiens
ENSG00000088247
D
0.774
FUBP3
Homo sapiens
ENSG00000107164
N
0.798
FUBP1
Homo sapiens
ENSG00000162613
I
1.000
KHSRP
Gasterosteus aculeatus
ENSGACG00000012422
I
0.732
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.869
FUBP3
Gasterosteus aculeatus
ENSGACG00000016704
N
0.729
KHSRP
Gasterosteus aculeatus
ENSGACG00000018990
I
0.708
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.791
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.985
KHSRP
Gorilla gorilla
ENSGGOG00000007028
I
0.774
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.798
KHSRP
Loxodonta africana
ENSLAFG00000002426
I
0.774
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.996
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.795
KHSRP
Macropus eugenii
ENSMEUG00000016601
I
0.732
FUBP3
Meleagris gallopavo
ENSMGAG00000005342
N
0.791
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.984
KHSRP
Microcebus murinus
ENSMICG00000007863
I
0.759
FUBP1
Microcebus murinus
ENSMICG00000014463
N
0.840
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.802
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.760
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.996
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
1.000
KHSRP
Macaca mulatta
ENSMMUG00000005597
I
0.774
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.798
KHSRP
Monodelphis domestica
ENSMODG00000001952
I
0.720
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.783
Khsrp
Mus musculus
ENSMUSG00000007670
I
0.774
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.791
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.992
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.795
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.996
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.923
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.996
FUBP1
Ochotona princeps
ENSOPRG00000001175
N
0.888
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.795
KHSRP
Ochotona princeps
ENSOPRG00000010594
I
0.770
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.860
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.717
KHSRP
Oryzias latipes
ENSORLG00000011882
I
0.716
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.767
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.775
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.996
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
1.000
ENSPPYG00000009454
Pongo pygmaeus
ENSPPYG00000009454
I
0.774
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.798
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
1.000
KHSRP
Pan troglodytes
ENSPTRG00000010364
I
0.774
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.798
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.802
KHSRP
Pteropus vampyrus
ENSPVAG00000007251
I
0.774
FUBP1
Pteropus vampyrus
ENSPVAG00000014637
N
0.821
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.795
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.996
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.996
KHSRP
Sus scrofa
ENSSSCG00000013538
I
0.774
KHSRP
Spermophilus tridecemlineatus
ENSSTOG00000002371
I
0.774
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.981
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.787
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.970
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.771
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.721
KHSRP
Tetraodon nigroviridis
ENSTNIG00000014067
I
0.700
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.860
KHSRP
Takifugu rubripes
ENSTRUG00000010395
I
0.708
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.767
FUBP3
Takifugu rubripes
ENSTRUG00000018658
N
0.717
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.988
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.996
KHSRP
Tursiops truncatus
ENSTTRG00000010390
I
0.774
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.996
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.787
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.946
estExt_fgenesh2_pg.C_1480047
Branchiostoma floridae
estExt_fgenesh2_pg.C_1480047
N
0.700