LOC100415491 (Callithrix jacchus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSCJAG00000006035 T24169_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.989
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.989
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.905
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.905
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.905
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.905
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.905
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.777
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.777
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.777
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.777
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.777
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.777
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.777
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000011250 PUF 585 619
ENSCJAP00000011250 PUF 621 653
ENSCJAP00000011250 PUF 657 689
ENSCJAP00000011250 PUF 695 729
ENSCJAP00000011250 PUF 731 765
ENSCJAP00000011250 PUF 767 801
ENSCJAP00000011250 PUF 803 833
ENSCJAP00000011250 PUF 849 880
ENSCJAP00000011275 PUF 704 738
ENSCJAP00000011275 PUF 740 772
ENSCJAP00000011275 PUF 776 807
ENSCJAP00000011275 PUF 814 848
ENSCJAP00000011275 PUF 850 884
ENSCJAP00000011275 PUF 886 920
ENSCJAP00000011275 PUF 922 952
ENSCJAP00000011275 PUF 968 999
ENSCJAP00000011316 PUF 848 882
ENSCJAP00000011316 PUF 884 916
ENSCJAP00000011316 PUF 920 951
ENSCJAP00000011316 PUF 958 992
ENSCJAP00000011316 PUF 994 1028
ENSCJAP00000011316 PUF 1030 1064
ENSCJAP00000011316 PUF 1066 1096
ENSCJAP00000011316 PUF 1112 1143
ENSCJAP00000011345 PUF 884 918
ENSCJAP00000011345 PUF 920 952
ENSCJAP00000011345 PUF 956 987
ENSCJAP00000011345 PUF 994 1028
ENSCJAP00000011345 PUF 1030 1064
ENSCJAP00000011345 PUF 1066 1100
ENSCJAP00000011345 PUF 1102 1132
ENSCJAP00000011345 PUF 1148 1179

Links

Other PUF family RBPs
Other Callithrix jacchus RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R015605 Ailuropoda melanoleuca Ame_R015605 N 0.000
NUP153 Anolis carolinensis ENSACAG00000004118 N 0.000
NUP153 Bos taurus ENSBTAG00000017128 N 0.000
NUP153 Canis familiaris ENSCAFG00000010146 N 0.000
ENSCHOG00000003510 Choloepus hoffmanni ENSCHOG00000003510 N 0.000
ENSCHOG00000007137 Choloepus hoffmanni ENSCHOG00000007137 N 0.000
ENSCHOG00000008316 Choloepus hoffmanni ENSCHOG00000008316 N 0.000
ENSCHOG00000009608 Choloepus hoffmanni ENSCHOG00000009608 N 0.000
ENSCHOG00000013388 Choloepus hoffmanni ENSCHOG00000013388 N 0.000
NUP153 Callithrix jacchus ENSCJAG00000006685 N 0.000
NUP153 Cavia porcellus ENSCPOG00000004007 N 0.000
Nup153 Dipodomys ordii ENSDORG00000001736 N 0.000
NUP153 Equus caballus ENSECAG00000016010 N 0.000
NUP153 Erinaceus europaeus ENSEEUG00000010183 N 0.000
NUP153 Felis catus ENSFCAG00000011583 N 0.000
NUP153 Homo sapiens ENSG00000124789 N 0.000
NUP153 Gallus gallus ENSGALG00000012720 N 0.000
NUP153 Gorilla gorilla ENSGGOG00000014261 N 0.000
NUP153 Loxodonta africana ENSLAFG00000015905 N 0.000
NUP153 Myotis lucifugus ENSMLUG00000004775 N 0.000
NUP153 Macaca mulatta ENSMMUG00000001993 N 0.000
NUP153 Monodelphis domestica ENSMODG00000010951 N 0.000
Nup153 Mus musculus ENSMUSG00000021374 N 0.000
NUP153 Ornithorhynchus anatinus ENSOANG00000011858 N 0.000
NUP153 Oryctolagus cuniculus ENSOCUG00000003064 N 0.000
NUP153 Otolemur garnettii ENSOGAG00000014899 N 0.000
NUP153 Ochotona princeps ENSOPRG00000006221 N 0.000
NUP153 Procavia capensis ENSPCAG00000010444 N 0.000
ENSPPYG00000016259 Pongo pygmaeus ENSPPYG00000016259 N 0.000
NUP153 Pteropus vampyrus ENSPVAG00000012632 N 0.000
Nup153 Rattus norvegicus ENSRNOG00000001456 N 0.000
NUP153 Sorex araneus ENSSARG00000013269 N 0.000
NUP153 Tupaia belangeri ENSTBEG00000004161 N 0.000
ENSTSYG00000001251 Tarsius syrichta ENSTSYG00000001251 N 0.000
ENSTSYG00000001592 Tarsius syrichta ENSTSYG00000001592 N 0.000
ENSTSYG00000010775 Tarsius syrichta ENSTSYG00000010775 N 0.000
NUP153 Vicugna pacos ENSVPAG00000002072 N 0.000