pum2 (Xenopus tropicalis)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSXETG00000008903 T24299_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.931
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.931
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.931
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.931
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.931
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.869
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.869
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.791
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.791
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.791
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.791
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.791
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.791
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.791
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000019533 PUF 848 881
ENSXETP00000019533 PUF 883 914
ENSXETP00000019533 PUF 919 952
ENSXETP00000019533 PUF 957 991
ENSXETP00000019533 PUF 993 1027
ENSXETP00000019533 PUF 1029 1063
ENSXETP00000019533 PUF 1065 1099
ENSXETP00000019533 PUF 1112 1142

Links

Other PUF family RBPs
Other Xenopus tropicalis RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.938
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.934
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.931
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.931
PUM2 Homo sapiens ENSG00000055917 D 0.931
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.931
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.931
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.931
PUM2 Canis familiaris ENSCAFG00000003839 I 0.931
Pum2 Mus musculus ENSMUSG00000020594 D 0.931
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.931
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.931
PUM2 Bos taurus ENSBTAG00000011155 I 0.927
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.927
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.927
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.927
PUM2 Equus caballus ENSECAG00000021930 I 0.927
PUM2 Sus scrofa ENSSSCG00000008600 I 0.927
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.927
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.927
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.927
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.923
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.912
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.912
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.909
PUM2 Oryzias latipes ENSORLG00000012611 I 0.909
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.908
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.905
BAB20864 Xenopus laevis BAB20864 I 0.901
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.887
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.887
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.887
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.884
BAC57980 Xenopus laevis BAC57980 I 0.883
AAH80379 Xenopus laevis AAH80379 I 0.883
PUM1 Microcebus murinus ENSMICG00000007713 I 0.880
AAL14121 Xenopus laevis AAL14121 I 0.880
PUM1 Oryzias latipes ENSORLG00000011482 I 0.876
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.875
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.875
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.875
PUM1 Sus scrofa ENSSSCG00000003591 I 0.875
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.875
PUM1 Canis familiaris ENSCAFG00000011205 I 0.875
PUM1 Bos taurus ENSBTAG00000018979 I 0.872
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.872
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.872
PUM1 Homo sapiens ENSG00000134644 D 0.872
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.872
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.872
PUM1 Sorex araneus ENSSARG00000003055 I 0.872
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.869
PUM1 Equus caballus ENSECAG00000021369 I 0.869
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.868
Pum1 Mus musculus ENSMUSG00000028580 I 0.868
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.868
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.864
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.861
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.861
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.843
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.828
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.828
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.826
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.805
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.799
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.796
AAEL012420 Aedes aegypti AAEL012420 I 0.795
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.795
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.795
AGAP003914 Anopheles gambiae AGAP003914 I 0.794
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.794
GK14049 Drosophila willistoni FBgn0216055 I 0.791
GF18428 Drosophila ananassae FBgn0095446 I 0.791
GG17394 Drosophila erecta FBgn0109620 I 0.791
pum Drosophila melanogaster FBgn0003165 D 0.791
GM26283 Drosophila sechellia FBgn0181138 I 0.791
GE24797 Drosophila yakuba FBgn0241899 I 0.791
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.791
GH15257 Drosophila grimshawi FBgn0122732 I 0.788
GI22503 Drosophila mojavensis FBgn0145231 I 0.788
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.788
GJ10105 Drosophila virilis FBgn0197393 I 0.784
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.784
GL22345 Drosophila persimilis FBgn0159937 I 0.784
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.784
PHUM490070 Pediculus humanus PHUM490070 I 0.781
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.777
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.747