PUM1 (Microcebus murinus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSMICG00000007713 T24221_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.971
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.971
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.912
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.912
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.912
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.912
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.912
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.784
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.784
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.784
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.784
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.784
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.784
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.784
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMICP00000007023 PUF 848 882
ENSMICP00000007023 PUF 884 916
ENSMICP00000007023 PUF 920 951
ENSMICP00000007023 PUF 958 992
ENSMICP00000007023 PUF 994 1028
ENSMICP00000007023 PUF 1030 1064
ENSMICP00000007023 PUF 1066 1100
ENSMICP00000007023 PUF 1112 1143

Links

Other PUF family RBPs
Other Microcebus murinus RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.989
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.989
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.989
AAH80379 Xenopus laevis AAH80379 I 0.985
BAC57980 Xenopus laevis BAC57980 I 0.985
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.982
PUM1 Homo sapiens ENSG00000134644 D 0.982
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.982
AAL14121 Xenopus laevis AAL14121 I 0.982
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.982
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.978
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.978
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.978
PUM1 Canis familiaris ENSCAFG00000011205 I 0.978
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.974
PUM1 Sorex araneus ENSSARG00000003055 I 0.974
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.974
Pum1 Mus musculus ENSMUSG00000028580 I 0.974
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.974
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.971
PUM1 Sus scrofa ENSSSCG00000003591 I 0.971
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.971
PUM1 Bos taurus ENSBTAG00000018979 I 0.967
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.967
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.967
PUM1 Equus caballus ENSECAG00000021369 I 0.960
BAB20864 Xenopus laevis BAB20864 I 0.960
PUM1 Oryzias latipes ENSORLG00000011482 I 0.952
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.934
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.934
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.916
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.915
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.912
PUM2 Homo sapiens ENSG00000055917 D 0.912
PUM2 Canis familiaris ENSCAFG00000003839 I 0.912
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.912
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.912
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.912
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.912
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.912
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.912
Pum2 Mus musculus ENSMUSG00000020594 D 0.912
PUM2 Bos taurus ENSBTAG00000011155 I 0.909
PUM2 Sus scrofa ENSSSCG00000008600 I 0.909
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.909
PUM2 Equus caballus ENSECAG00000021930 I 0.909
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.908
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.908
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.908
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.905
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.905
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.905
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.902
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.890
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.886
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.880
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.879
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.879
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.875
PUM2 Oryzias latipes ENSORLG00000012611 I 0.875
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.821
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.821
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.816
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.812
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.804
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.801
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.784
PHUM490070 Pediculus humanus PHUM490070 I 0.784
AAEL012420 Aedes aegypti AAEL012420 I 0.784
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.784
GM26283 Drosophila sechellia FBgn0181138 I 0.784
pum Drosophila melanogaster FBgn0003165 D 0.784
AGAP003914 Anopheles gambiae AGAP003914 I 0.783
GF18428 Drosophila ananassae FBgn0095446 I 0.781
GE24797 Drosophila yakuba FBgn0241899 I 0.781
GK14049 Drosophila willistoni FBgn0216055 I 0.781
GG17394 Drosophila erecta FBgn0109620 I 0.781
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.777
GI22503 Drosophila mojavensis FBgn0145231 I 0.777
GH15257 Drosophila grimshawi FBgn0122732 I 0.777
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.776
GJ10105 Drosophila virilis FBgn0197393 I 0.773
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.773
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.770
GL22345 Drosophila persimilis FBgn0159937 I 0.770
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.770
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.763
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.753